Mustafa Erhan Özer
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_17 |
| git_last_commit: 39afc67 |
| git_last_commit_date: 2023-04-25 11:44:47 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:37:36 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2050/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.0.0 (landing page) Mustafa Erhan Özer
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.0.0.tar.gz |
| StartedAt: 2023-10-16 07:49:47 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 07:59:21 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 574.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/SVMDO.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 3482,1890,4688,5515,57128,25805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728294,2645,6289,5327,8862,4233
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 494324,3141,219,170302,5373,3802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 337,2157,2806,6786,80854,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65080,54600,2793,7442,57107,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,31,6319,7515,3717,51555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6390,7369,9971,1968,1757,1490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5584,51300,19,57192,5122,1376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7916,84447,11095,23411,1244,9122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57264,407021,5723,6748,1557,114884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10229,3691,28951,84947,156,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,1281,4522,776,6722,686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,6319,5824,23530,116085,10628
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6524,5295,2147,4714,2030,1401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 706,650,5962,3418,387787,90070
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,5108,4744,3640,2588,5972
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10666,6526,5449,79585,619373,875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,9968,867,5792,51167,3815
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7025,7515,7132,8740,148713,57511
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3157,7098,27247,5836,336,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,10000,3501,643181,1737,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4548,5971,1200,9445,5745,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 383,886,54805,406,728294,3082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5321,3558,5071,6439,55278,8835
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,55283,1113,4852,1965,355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5799,487,6390,3291,909,64102
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 540,6566,522,6583,84649,57554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,5346,7390,2305,10745,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1182,5261,114899,538,477,84572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26503,55805,2950,1909,64241,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7351,22877,100507436,3995,23118,6389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,55572,3251,81029,4255,27247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,790,84947,4694,4149,2222
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,1374,4128,2628,1277,10272
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2890,55034,4171,7019,1803,790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10013,7381,84447,4540,4151,1607
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4580,7507,50943,2063,800,1606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,210,3484,7033,3032,2932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79133,5798,3811,3596,840,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3778,594,23118,4780,694,2998
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3875,55858,55863,57128,50814,1605
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6009,25828,4726,10599,7026,3574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,4723,6464,9692,2740,51300
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1573,7289,793,9560,3685,5096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2099,10279,56922,4286,7364,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151306,3485,10379,10559,5579,5660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338557,3636,23516,1365,3077,4938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5962,2305,5565,4233,6720,79949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5105,943,4843,6517,3605,3615
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 841,4864,79071,7471,7031,229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4091,10102,514,3784,26088,216
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,23556,3685,2740,5925,2786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,3625,846,51119,6898,5369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6526,30061,2731,253827,8517,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 15,150,27035,1650,3576,55532
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,9722,55858,7422,4973,112817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,6343,5096,10559,2820,136259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2495,337,6357,9927,5584,100131801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,4502,55037,6622,10352,10642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5294,4609,347,6354,10524,4255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 192343,7351,9514,7128,79087,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3385,9255,4232,5327,5367,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3240,3119,1889,642489,3484,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10134,3426,23479,406,1234,4124
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,7054,7077,2309,55967,57511
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3284,5571,2582,3033,10841,5697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,4591,29078,2653,940,80309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 177,1509,84889,64116,728294,4973
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,1393,292,840,28951,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,407024,1520,9445,11222,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2169,407006,5277,2170,4914,796
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2280,9882,2101,8829,10730,162417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5320,84342,7376,5444,2559,958
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 125988,5192,6258,563,8942,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2632,3593,2539,652,115286,4671
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1716,1548,4540,3988,136259,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,1537,335,27089,3502,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3768,1524,55768,5715,60,80724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3351,462,4255,3303,55331,2820
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
36.408 1.667 48.415
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.968 | 0.041 | 1.294 | |