| Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-07 11:12:11 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the variancePartition package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2077/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| variancePartition 1.27.2 (landing page) Gabriel E. Hoffman
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: variancePartition |
| Version: 1.27.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition |
| StartedAt: 2022-07-07 07:08:10 -0400 (Thu, 07 Jul 2022) |
| EndedAt: 2022-07-07 07:10:47 -0400 (Thu, 07 Jul 2022) |
| EllapsedTime: 156.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition ### ############################################################################## ############################################################################## * checking for file ‘variancePartition/DESCRIPTION’ ... OK * preparing ‘variancePartition’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: variancePartition * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘FAQ.Rmd’ using rmarkdown --- finished re-building ‘FAQ.Rmd’ --- re-building ‘additional_visualization.Rmd’ using rmarkdown Loading required package: ggplot2 Loading required package: limma Loading required package: BiocParallel Memory usage to store result: >90.9 Kb Dividing work into 1 chunks... Total:0.2 s --- finished re-building ‘additional_visualization.Rmd’ --- re-building ‘dream.Rmd’ using rmarkdown Quitting from lines 89-103 (dream.Rmd) Error: processing vignette 'dream.Rmd' failed with diagnostics: there is no package called 'edgeR' --- failed re-building ‘dream.Rmd’ --- re-building ‘theory_practice_random_effects.Rmd’ using rmarkdown Loading required package: Matrix --- finished re-building ‘theory_practice_random_effects.Rmd’ --- re-building ‘variancePartition.Rnw’ using knitr Dividing work into 10 chunks... Total:10 s Dividing work into 10 chunks... Total:10 s Memory usage to store result: >9.9 Mb Dividing work into 10 chunks... Total:8 s Memory usage to store result: >6.3 Mb Dividing work into 10 chunks... Total:11 s Dividing work into 10 chunks... Total:10 s Dividing work into 10 chunks... Total:7 s Memory usage to store result: >6.9 Mb Dividing work into 10 chunks... Total:4 s Dividing work into 10 chunks... Total:8 s Memory usage to store result: >1.4 Mb Dividing work into 10 chunks... Total:4 s Dividing work into 10 chunks... Total:14 s Memory usage to store result: >191.8 Kb Dividing work into 1 chunks... Total:0.2 s Dividing work into 1 chunks... Total:0.2 s Dividing work into 10 chunks... Total:12 s Quitting from lines 549-578 (variancePartition.Rnw) Error: processing vignette 'variancePartition.Rnw' failed with diagnostics: there is no package called 'edgeR' --- failed re-building ‘variancePartition.Rnw’ SUMMARY: processing the following files failed: ‘dream.Rmd’ ‘variancePartition.Rnw’ Error: Vignette re-building failed. Execution halted