Back to Multiple platform build/check report for BioC 3.16
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-07-07 11:11:58 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for scuttle on kjohnson


To the developers/maintainers of the scuttle package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scuttle.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1782/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scuttle 1.7.2  (landing page)
Aaron Lun
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/scuttle
git_branch: master
git_last_commit: d20d174
git_last_commit_date: 2022-05-13 02:26:25 -0400 (Fri, 13 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: scuttle
Version: 1.7.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scuttle
StartedAt: 2022-07-07 04:55:49 -0400 (Thu, 07 Jul 2022)
EndedAt: 2022-07-07 04:57:14 -0400 (Thu, 07 Jul 2022)
EllapsedTime: 84.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scuttle
###
##############################################################################
##############################################################################


* checking for file ‘scuttle/DESCRIPTION’ ... OK
* preparing ‘scuttle’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘misc.Rmd’ using rmarkdown
Quitting from lines 32-40 (misc.Rmd) 
Error: processing vignette 'misc.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘misc.Rmd’

--- re-building ‘norm.Rmd’ using rmarkdown
Quitting from lines 32-40 (norm.Rmd) 
Error: processing vignette 'norm.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘norm.Rmd’

--- re-building ‘qc.Rmd’ using rmarkdown
Quitting from lines 35-38 (qc.Rmd) 
Error: processing vignette 'qc.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘qc.Rmd’

SUMMARY: processing the following files failed:
  ‘misc.Rmd’ ‘norm.Rmd’ ‘qc.Rmd’

Error: Vignette re-building failed.
Execution halted