Paul J. McMurdie
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/phyloseq |
| git_branch: master |
| git_last_commit: 46b9f7c |
| git_last_commit_date: 2022-04-26 11:10:12 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:11:43 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the phyloseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phyloseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1442/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| phyloseq 1.41.0 (landing page) Paul J. McMurdie
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: phyloseq |
| Version: 1.41.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq |
| StartedAt: 2022-07-07 02:14:24 -0400 (Thu, 07 Jul 2022) |
| EndedAt: 2022-07-07 02:15:58 -0400 (Thu, 07 Jul 2022) |
| EllapsedTime: 93.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq ### ############################################################################## ############################################################################## * checking for file ‘phyloseq/DESCRIPTION’ ... OK * preparing ‘phyloseq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘phyloseq-FAQ.Rmd’ using rmarkdown --- finished re-building ‘phyloseq-FAQ.Rmd’ --- re-building ‘phyloseq-analysis.Rmd’ using rmarkdown Warning: Transformation introduced infinite values in discrete y-axis Warning: Transformation introduced infinite values in discrete y-axis Warning: It is deprecated to specify `guide = FALSE` to remove a guide. Please use `guide = "none"` instead. Warning: It is deprecated to specify `guide = FALSE` to remove a guide. Please use `guide = "none"` instead. Warning: stat_contour(): Zero contours were generated Warning in min(x) : no non-missing arguments to min; returning Inf Warning in max(x) : no non-missing arguments to max; returning -Inf Warning: stat_contour(): Zero contours were generated Warning in min(x) : no non-missing arguments to min; returning Inf Warning in max(x) : no non-missing arguments to max; returning -Inf Warning: stat_contour(): Zero contours were generated Warning in min(x) : no non-missing arguments to min; returning Inf Warning in max(x) : no non-missing arguments to max; returning -Inf Warning: stat_contour(): Zero contours were generated Warning in min(x) : no non-missing arguments to min; returning Inf Warning in max(x) : no non-missing arguments to max; returning -Inf Warning: It is deprecated to specify `guide = FALSE` to remove a guide. Please use `guide = "none"` instead. Warning: It is deprecated to specify `guide = FALSE` to remove a guide. Please use `guide = "none"` instead. --- finished re-building ‘phyloseq-analysis.Rmd’ --- re-building ‘phyloseq-basics.Rmd’ using rmarkdown Quitting from lines 487-495 (phyloseq-basics.Rmd) Error: processing vignette 'phyloseq-basics.Rmd' failed with diagnostics: there is no package called 'genefilter' --- failed re-building ‘phyloseq-basics.Rmd’ --- re-building ‘phyloseq-mixture-models.Rmd’ using rmarkdown Warning in microbio_me_qiime(filepath) : NAs introduced by coercion Quitting from lines 101-102 (phyloseq-mixture-models.Rmd) Error: processing vignette 'phyloseq-mixture-models.Rmd' failed with diagnostics: there is no package called 'DESeq2' --- failed re-building ‘phyloseq-mixture-models.Rmd’ SUMMARY: processing the following files failed: ‘phyloseq-basics.Rmd’ ‘phyloseq-mixture-models.Rmd’ Error: Vignette re-building failed. Execution halted