Kim Philipp Jablonski
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/pareg |
| git_branch: master |
| git_last_commit: 72e2620 |
| git_last_commit_date: 2022-04-26 12:22:38 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:11:41 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the pareg package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1399/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pareg 1.1.0 (landing page) Kim Philipp Jablonski
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: pareg |
| Version: 1.1.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg |
| StartedAt: 2022-07-07 01:54:53 -0400 (Thu, 07 Jul 2022) |
| EndedAt: 2022-07-07 01:56:19 -0400 (Thu, 07 Jul 2022) |
| EllapsedTime: 85.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################
* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
Loading required package: ggplot2
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ tibble 3.1.7 ✔ dplyr 1.0.9
✔ tidyr 1.2.0 ✔ stringr 1.4.0
✔ readr 2.1.2 ✔ forcats 0.5.1
✔ purrr 0.3.4
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Loading required package: grid
========================================
ComplexHeatmap version 2.13.0
Bioconductor page: http://bioconductor.org/packages/ComplexHeatmap/
Github page: https://github.com/jokergoo/ComplexHeatmap
Documentation: http://jokergoo.github.io/ComplexHeatmap-reference
If you use it in published research, please cite:
Gu, Z. Complex heatmaps reveal patterns and correlations in multidimensional
genomic data. Bioinformatics 2016.
The new InteractiveComplexHeatmap package can directly export static
complex heatmaps into an interactive Shiny app with zero effort. Have a try!
This message can be suppressed by:
suppressPackageStartupMessages(library(ComplexHeatmap))
========================================
Loading required package: tensorflow
Loading required package: tfprobability
Attaching package: 'pareg'
The following objects are masked from 'package:stats':
family, gaussian
The following object is masked from 'package:base':
beta
Quitting from lines 145-150 (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/opt/homebrew/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/bin/python3.9
/usr/bin/python3
Python exception encountered:
Traceback (most recent call last):
File "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 39, in _import_hook
module = _import(
ModuleNotFoundError: No module named 'tensorflow'
You can install TensorFlow using the install_tensorflow() function.
--- failed re-building ‘pareg.Rmd’
--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
========================================
circlize version 0.4.15
CRAN page: https://cran.r-project.org/package=circlize
Github page: https://github.com/jokergoo/circlize
Documentation: https://jokergoo.github.io/circlize_book/book/
If you use it in published research, please cite:
Gu, Z. circlize implements and enhances circular visualization
in R. Bioinformatics 2014.
This message can be suppressed by:
suppressPackageStartupMessages(library(circlize))
========================================
Registered S3 method overwritten by 'GGally':
method from
+.gg ggplot2
Attaching package: 'GGally'
The following object is masked from 'package:enrichplot':
ggtable
--- finished re-building ‘pathway_similarities.Rmd’
SUMMARY: processing the following file failed:
‘pareg.Rmd’
Error: Vignette re-building failed.
Execution halted