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###
### Running command:
###
###   rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mbkmeans_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mbkmeans.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mbkmeans.buildbin-libdir mbkmeans_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/ClusterR/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/ClusterR/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/armadillo:26:
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
          ^
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
    #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
            ^
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  #pragma message ("INFO: see the documentation for details")
          ^
In file included from mini_batch.cpp:3:
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/ClusterR/include/ClusterRHeader.h:926:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
        bool status;
             ^
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/ClusterR/include/ClusterRHeader.h:1601:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
        bool status;
             ^
5 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so"