Back to Multiple platform build/check report for BioC 3.16
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This page was generated on 2022-07-07 11:11:16 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for h5vc on kjohnson


To the developers/maintainers of the h5vc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 864/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.31.1  (landing page)
Paul Theodor Pyl
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: master
git_last_commit: c176251
git_last_commit_date: 2022-05-04 04:07:23 -0400 (Wed, 04 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: h5vc
Version: 2.31.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2022-07-06 22:25:16 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 22:25:18 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 2.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
##############################################################################


* checking for file ‘h5vc/DESCRIPTION’ ... OK
* preparing ‘h5vc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘h5vc’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bam.c -o bam.o
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
In file included from ./bam.c:1:
./bam.c:1:10: error: 'bam.c' file not found with <angled> include; use "quotes" instead
#include <bam.c>
         ^~~~~~~
         "bam.c"
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [bam.o] Error 1
ERROR: compilation failed for package ‘h5vc’
* removing ‘/private/tmp/RtmpqjmnKi/Rinstab272dad1c6/h5vc’
      -----------------------------------
ERROR: package installation failed