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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gsean
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* checking for file ‘gsean/DESCRIPTION’ ... OK
* preparing ‘gsean’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘gsean.Rmd’ using rmarkdown
Loading required package: fgsea
Loading required package: PPInfer
Loading required package: biomaRt
Loading required package: kernlab
Loading required package: ggplot2
Attaching package: 'ggplot2'
The following object is masked from 'package:kernlab':
alpha
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: STRINGdb
Loading required package: yeastExpData
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:igraph':
normalize, path, union
The following object is masked from 'package:kernlab':
type
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Attaching package: 'graph'
The following objects are masked from 'package:igraph':
degree, edges, intersection
Quitting from lines 92-132 (gsean.Rmd)
Error: processing vignette 'gsean.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘gsean.Rmd’
SUMMARY: processing the following file failed:
‘gsean.Rmd’
Error: Vignette re-building failed.
Execution halted