| Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-07 11:11:09 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the fobitools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fobitools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 697/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fobitools 1.5.0 (landing page) Pol Castellano-Escuder
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: fobitools |
| Version: 1.5.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fobitools |
| StartedAt: 2022-07-06 21:13:44 -0400 (Wed, 06 Jul 2022) |
| EndedAt: 2022-07-06 21:14:26 -0400 (Wed, 06 Jul 2022) |
| EllapsedTime: 41.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fobitools
###
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* checking for file ‘fobitools/DESCRIPTION’ ... OK
* preparing ‘fobitools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Dietary_data_annotation.Rmd’ using rmarkdown
Registered S3 methods overwritten by 'readr':
method from
as.data.frame.spec_tbl_df vroom
as_tibble.spec_tbl_df vroom
format.col_spec vroom
print.col_spec vroom
print.collector vroom
print.date_names vroom
print.locale vroom
str.col_spec vroom
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.3.6 ✔ purrr 0.3.4
✔ tibble 3.1.7 ✔ dplyr 1.0.9
✔ tidyr 1.2.0 ✔ stringr 1.4.0
✔ readr 2.1.2 ✔ forcats 0.5.1
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Attaching package: 'kableExtra'
The following object is masked from 'package:dplyr':
group_rows
Warning: ggrepel: 122 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 122 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘Dietary_data_annotation.Rmd’
--- re-building ‘MW_ST000291_enrichment.Rmd’ using rmarkdown
Attaching package: 'rvest'
The following object is masked from 'package:readr':
guess_encoding
Quitting from lines 53-63 (MW_ST000291_enrichment.Rmd)
Error: processing vignette 'MW_ST000291_enrichment.Rmd' failed with diagnostics:
there is no package called 'POMA'
--- failed re-building ‘MW_ST000291_enrichment.Rmd’
--- re-building ‘MW_ST000629_enrichment.Rmd’ using rmarkdown
Quitting from lines 53-62 (MW_ST000629_enrichment.Rmd)
Error: processing vignette 'MW_ST000629_enrichment.Rmd' failed with diagnostics:
there is no package called 'POMA'
--- failed re-building ‘MW_ST000629_enrichment.Rmd’
--- re-building ‘food_enrichment_analysis.Rmd’ using rmarkdown
metaboliteUniverse size: 300
metaboliteList size: 9
Warning: ggrepel: 143 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 143 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘food_enrichment_analysis.Rmd’
SUMMARY: processing the following files failed:
‘MW_ST000291_enrichment.Rmd’ ‘MW_ST000629_enrichment.Rmd’
Error: Vignette re-building failed.
Execution halted