Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-11 11:06:46 -0400 (Mon, 11 Jul 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4148 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4168 |
kjohnson | macOS 12.4 Monterey | arm64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 3545 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the flowPeaks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 685/2130 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowPeaks 1.43.0 (landing page) Yongchao Ge
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson | macOS 12.4 Monterey / arm64 | ERROR | NA | NA | NA | |||||||||
Package: flowPeaks |
Version: 1.43.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowPeaks |
StartedAt: 2022-07-10 15:06:54 -0400 (Sun, 10 Jul 2022) |
EndedAt: 2022-07-10 15:07:17 -0400 (Sun, 10 Jul 2022) |
EllapsedTime: 22.3 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowPeaks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘flowPeaks’ ... ** using staged installation ** libs clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c Rpack.cpp -o Rpack.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c Rregistrate.cpp -o Rregistrate.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o VoronoiDiagramGenerator.cpp:803:5: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses] if(!triangulate & plot & !debug) ^ ~ VoronoiDiagramGenerator.cpp:803:5: note: add parentheses after the '!' to evaluate the bitwise operator first if(!triangulate & plot & !debug) ^ ( ) VoronoiDiagramGenerator.cpp:803:5: note: add parentheses around left hand side expression to silence this warning if(!triangulate & plot & !debug) ^ ( ) 1 warning generated. clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c flowPeaks.cpp -o flowPeaks.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c func_collect.cpp -o func_collect.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c func_collect_supp.cpp -o func_collect_supp.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c kd_tree.cpp -o kd_tree.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include `gsl-config --cflags` -fPIC -falign-functions=64 -Wall -g -O2 -c kmns.cpp -o kmns.o clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: ignoring file /usr/local/lib/libgslcblas.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64 ld: warning: ignoring file /usr/local/lib/libgsl.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64 installing to /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-flowPeaks/00new/flowPeaks/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘flowPeaks’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-flowPeaks/00new/flowPeaks/libs/flowPeaks.so': dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-flowPeaks/00new/flowPeaks/libs/flowPeaks.so, 0x0006): symbol not found in flat namespace '_gsl_blas_ddot' Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/flowPeaks’