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This page was generated on 2022-07-07 11:11:45 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for PREDA on kjohnson


To the developers/maintainers of the PREDA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PREDA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1478/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PREDA 1.43.0  (landing page)
Francesco Ferrari
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/PREDA
git_branch: master
git_last_commit: 055c3c5
git_last_commit_date: 2022-04-26 11:08:35 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: PREDA
Version: 1.43.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PREDA
StartedAt: 2022-07-07 02:30:21 -0400 (Thu, 07 Jul 2022)
EndedAt: 2022-07-07 02:30:56 -0400 (Thu, 07 Jul 2022)
EllapsedTime: 35.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PREDA
###
##############################################################################
##############################################################################


* checking for file ‘PREDA/DESCRIPTION’ ... OK
* preparing ‘PREDA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘PREDAclasses.Rnw’ using Sweave
--- finished re-building ‘PREDAclasses.Rnw’

--- re-building ‘PREDAtutorial.Rnw’ using Sweave
Loading required package: PREDAsampledata
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘PREDAsampledata’
Loading required package: PREDA
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, basename,
    cbind, colnames, dirname, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max,
    which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: lokern
Loading required package: multtest
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: XML
Warning in file(file, "rt") :
  file("") only supports open = "w+" and open = "w+b": using the former

Error: processing vignette 'PREDAtutorial.Rnw' failed with diagnostics:
 chunk 3 
Error in read.table(infofile, sep = "\t", header = TRUE) : 
  no lines available in input

--- failed re-building ‘PREDAtutorial.Rnw’

SUMMARY: processing the following file failed:
  ‘PREDAtutorial.Rnw’

Error: Vignette re-building failed.
Execution halted