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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MesKit
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* checking for file ‘MesKit/DESCRIPTION’ ... OK
* preparing ‘MesKit’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MesKit.Rmd’ using rmarkdown
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
## Performing one-dimensional clustering for P_1 of V402
## Performing one-dimensional clustering for P_2 of V402
## Performing one-dimensional clustering for P_3 of V402
## Performing one-dimensional clustering for P_4 of V402
## Performing one-dimensional clustering for BM_1 of V402
## Performing one-dimensional clustering for BM_2 of V402
## Performing one-dimensional clustering for BM_3 of V402
## Performing one-dimensional clustering for BM_4 of V402
Warning in FUN(X[[i]], ...) :
  Eligible mutations of sample BM_1 from V402 is not enough for testing neutral evolution.
Warning in FUN(X[[i]], ...) :
  Eligible mutations of sample BM_2 from V402 is not enough for testing neutral evolution.
Warning in FUN(X[[i]], ...) :
  Eligible mutations of sample BM_3 from V402 is not enough for testing neutral evolution.
Warning in FUN(X[[i]], ...) :
  Eligible mutations of sample BM_4 from V402 is not enough for testing neutral evolution.
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname



clusterProfiler v4.5.1  For help: https://yulab-smu.top/biomedical-knowledge-mining-book/

If you use clusterProfiler in published research, please cite:
T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, X Fu, S Liu, X Bo, and G Yu. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. The Innovation. 2021, 2(3):100141

Attaching package: 'clusterProfiler'

The following object is masked from 'package:AnnotationDbi':

    select

The following object is masked from 'package:IRanges':

    slice

The following object is masked from 'package:S4Vectors':

    rename

The following object is masked from 'package:stats':

    filter

Warning in bitr(V402_Public$Hugo_Symbol, fromType = "SYMBOL", toType = c("ENTREZID"),  :
  4.52% of input gene IDs are fail to map...
Reading KEGG annotation online:

Reading KEGG annotation online:

Quitting from lines 459-461 (MesKit.Rmd) 
Error: processing vignette 'MesKit.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
--- failed re-building ‘MesKit.Rmd’

SUMMARY: processing the following file failed:
  ‘MesKit.Rmd’

Error: Vignette re-building failed.
Execution halted