Andrew McDavid
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/MAST |
| git_branch: master |
| git_last_commit: 2b84060 |
| git_last_commit_date: 2022-04-26 11:36:26 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:11:26 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MAST package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAST.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1074/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MAST 1.23.0 (landing page) Andrew McDavid
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: MAST |
| Version: 1.23.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAST |
| StartedAt: 2022-07-06 23:45:15 -0400 (Wed, 06 Jul 2022) |
| EndedAt: 2022-07-06 23:46:22 -0400 (Wed, 06 Jul 2022) |
| EllapsedTime: 67.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAST ### ############################################################################## ############################################################################## * checking for file ‘MAST/DESCRIPTION’ ... OK * preparing ‘MAST’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MAITAnalysis.Rmd’ using rmarkdown Quitting from lines 36-54 (MAITAnalysis.Rmd) Error: processing vignette 'MAITAnalysis.Rmd' failed with diagnostics: there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene' --- failed re-building ‘MAITAnalysis.Rmd’ --- re-building ‘MAST-Intro.Rmd’ using rmarkdown Done! Combining coefficients and standard errors Warning: Removed 137 rows containing missing values (geom_pointrange). Done! Warning in .bayesglm.fit.loop.printWarnings(Warning, state, family) : algorithm did not converge Warning in .bayesglm.fit.loop.printWarnings(Warning, state, family) : algorithm did not converge Done! Warning: Removed 5 rows containing missing values (geom_point). --- finished re-building ‘MAST-Intro.Rmd’ --- re-building ‘MAST-interoperability.Rmd’ using rmarkdown Quitting from lines 73-76 (MAST-interoperability.Rmd) Error: processing vignette 'MAST-interoperability.Rmd' failed with diagnostics: there is no package called 'scater' --- failed re-building ‘MAST-interoperability.Rmd’ SUMMARY: processing the following files failed: ‘MAITAnalysis.Rmd’ ‘MAST-interoperability.Rmd’ Error: Vignette re-building failed. Execution halted