Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-07 11:11:16 -0400 (Thu, 07 Jul 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HIBAG package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HIBAG.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 880/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HIBAG 1.33.0 (landing page) Xiuwen Zheng
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson | macOS 12.4 Monterey / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
Package: HIBAG |
Version: 1.33.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HIBAG |
StartedAt: 2022-07-06 22:31:26 -0400 (Wed, 06 Jul 2022) |
EndedAt: 2022-07-06 22:31:37 -0400 (Wed, 06 Jul 2022) |
EllapsedTime: 10.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HIBAG ### ############################################################################## ############################################################################## * checking for file ‘HIBAG/DESCRIPTION’ ... OK * preparing ‘HIBAG’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘HIBAG’ ... ** using staged installation ** libs clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c HIBAG.cpp -o HIBAG.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LibHLA.cpp -o LibHLA.o LibHLA.cpp:1240:7: warning: variable 'cpu_auto_avx2' set but not used [-Wunused-but-set-variable] bool cpu_auto_avx2, cpu_max; ^ 1 warning generated. clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LibHLA_ext_avx.cpp -o LibHLA_ext_avx.o LibHLA_ext_avx.cpp:529:6: error: out-of-line definition of '_PrepHaploMatch_avx' does not match any declaration in 'HLA_LIB::CAlg_Prediction'; did you mean '_PrepHaploMatch_def'? void SIMD_NAME(CAlg_Prediction::_PrepHaploMatch)(const TGenotype &Geno, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _PrepHaploMatch_def LibHLA_ext_avx.cpp:70:26: note: expanded from macro 'SIMD_NAME' #define SIMD_NAME(NAME) NAME ## _avx ^ <scratch space>:297:1: note: expanded from here _PrepHaploMatch_avx ^ ./LibHLA.h:416:15: note: '_PrepHaploMatch_def' declared here static void _PrepHaploMatch_def(const TGenotype &pG, ^ LibHLA_ext_avx.cpp:536:10: error: out-of-line definition of '_BestGuess_avx' does not match any declaration in 'HLA_LIB::CAlg_Prediction'; did you mean '_BestGuess_def'? THLAType SIMD_NAME(CAlg_Prediction::_BestGuess)(const CHaplotypeList &Haplo, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _BestGuess_def LibHLA_ext_avx.cpp:70:26: note: expanded from macro 'SIMD_NAME' #define SIMD_NAME(NAME) NAME ## _avx ^ <scratch space>:298:1: note: expanded from here _BestGuess_avx ^ ./LibHLA.h:421:19: note: '_BestGuess_def' declared here static THLAType _BestGuess_def(const CHaplotypeList &Haplo, const TGenotype &Geno); ^ LibHLA_ext_avx.cpp:542:8: error: out-of-line definition of '_PostProb_avx' does not match any declaration in 'HLA_LIB::CAlg_Prediction'; did you mean '_PostProb_def'? double SIMD_NAME(CAlg_Prediction::_PostProb)(const CHaplotypeList &Haplo, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _PostProb_def LibHLA_ext_avx.cpp:70:26: note: expanded from macro 'SIMD_NAME' #define SIMD_NAME(NAME) NAME ## _avx ^ <scratch space>:299:1: note: expanded from here _PostProb_avx ^ ./LibHLA.h:424:17: note: '_PostProb_def' declared here static double _PostProb_def(const CHaplotypeList &Haplo, const TGenotype &Geno, const THLAType &HLA); ^ LibHLA_ext_avx.cpp:548:8: error: out-of-line definition of '_PostProb2_avx' does not match any declaration in 'HLA_LIB::CAlg_Prediction'; did you mean '_PostProb2_def'? double SIMD_NAME(CAlg_Prediction::_PostProb2)(const CHaplotypeList &Haplo, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _PostProb2_def LibHLA_ext_avx.cpp:70:26: note: expanded from macro 'SIMD_NAME' #define SIMD_NAME(NAME) NAME ## _avx ^ <scratch space>:300:1: note: expanded from here _PostProb2_avx ^ ./LibHLA.h:427:17: note: '_PostProb2_def' declared here static double _PostProb2_def(const CHaplotypeList &Haplo, const TGenotype &Geno, double Prob[]); ^ 4 errors generated. make: *** [LibHLA_ext_avx.o] Error 1 ERROR: compilation failed for package ‘HIBAG’ * removing ‘/private/tmp/Rtmp9v0TIb/Rinstb977527b1269/HIBAG’ ----------------------------------- ERROR: package installation failed