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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSAR
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* checking for file ‘GSAR/DESCRIPTION’ ... OK
* preparing ‘GSAR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GSAR.Rnw’ using Sweave
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Warning in vattrs[[name]][index] <- value :
number of items to replace is not a multiple of replacement length
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:igraph’:
normalize, path, union
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: GSEABase
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Attaching package: ‘AnnotationDbi’
The following object is masked from ‘package:MASS’:
select
Loading required package: XML
Loading required package: graph
Attaching package: ‘graph’
The following object is masked from ‘package:XML’:
addNode
The following objects are masked from ‘package:igraph’:
degree, edges, intersection
Loading required package: hgu95a.db
Loading required package: org.Hs.eg.db
Error: processing vignette 'GSAR.Rnw' failed with diagnostics:
chunk 13
Error in library(genefilter) : there is no package called ‘genefilter’
--- failed re-building ‘GSAR.Rnw’
SUMMARY: processing the following file failed:
‘GSAR.Rnw’
Error: Vignette re-building failed.
Execution halted
