Back to Multiple platform build/check report for BioC 3.16
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-07-07 11:11:02 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for DirichletMultinomial on kjohnson


To the developers/maintainers of the DirichletMultinomial package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DirichletMultinomial.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 531/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.39.0  (landing page)
Martin Morgan
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/DirichletMultinomial
git_branch: master
git_last_commit: 8f995d6
git_last_commit_date: 2022-04-26 11:11:01 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: DirichletMultinomial
Version: 1.39.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DirichletMultinomial
StartedAt: 2022-07-06 20:20:13 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 20:20:24 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 11.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DirichletMultinomial
###
##############################################################################
##############################################################################


* checking for file ‘DirichletMultinomial/DESCRIPTION’ ... OK
* preparing ‘DirichletMultinomial’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘DirichletMultinomial’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -falign-functions=64 -Wall -g -O2  -c dirichlet_fit.c -o dirichlet_fit.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -falign-functions=64 -Wall -g -O2  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
    int signum, status;
                ^
1 warning generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: ignoring file /usr/local/lib/libgslcblas.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
ld: warning: ignoring file /usr/local/lib/libgsl.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
installing to /private/tmp/RtmpMDWILW/Rinst1039e3ff55aec/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘DirichletMultinomial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/private/tmp/RtmpMDWILW/Rinst1039e3ff55aec/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/DirichletMultinomial.so':
  dlopen(/private/tmp/RtmpMDWILW/Rinst1039e3ff55aec/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/DirichletMultinomial.so, 0x0006): symbol not found in flat namespace '_gsl_linalg_LU_decomp'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmpMDWILW/Rinst1039e3ff55aec/DirichletMultinomial’
      -----------------------------------
ERROR: package installation failed