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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CrispRVariants
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* checking for file ‘CrispRVariants/DESCRIPTION’ ... OK
* preparing ‘CrispRVariants’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘user_guide.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: Biostrings
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: XVector
Loading required package: GenomeInfoDb
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:IRanges':
startsWith, trim
The following objects are masked from 'package:S4Vectors':
first, first<-
The following object is masked from 'package:stats4':
nobs
The following object is masked from 'package:BiocGenerics':
combine
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Quitting from lines 271-276 (user_guide.Rmd)
Error: processing vignette 'user_guide.Rmd' failed with diagnostics:
there is no package called 'rtracklayer'
--- failed re-building ‘user_guide.Rmd’
SUMMARY: processing the following file failed:
‘user_guide.Rmd’
Error: Vignette re-building failed.
Execution halted
