Elana J. Fertig
| Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/CoGAPS |
| git_branch: master |
| git_last_commit: ace4b90 |
| git_last_commit_date: 2022-04-26 11:05:27 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-11 11:06:43 -0400 (Mon, 11 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4168 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 3545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CoGAPS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 373/2130 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CoGAPS 3.17.0 (landing page) Elana J. Fertig
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | ERROR | NA | NA | NA | |||||||||
| Package: CoGAPS |
| Version: 3.17.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CoGAPS |
| StartedAt: 2022-07-10 16:56:38 -0400 (Sun, 10 Jul 2022) |
| EndedAt: 2022-07-10 16:56:46 -0400 (Sun, 10 Jul 2022) |
| EllapsedTime: 8.3 seconds |
| RetCode: 1 |
| Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CoGAPS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘CoGAPS’ ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ -arch arm64 -std=gnu++14 accepts -g... yes checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++14 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether clang++ -arch arm64 -std=gnu++14 accepts -g... (cached) yes ./configure: line 2752: AX_COMPILER_VENDOR: command not found ./configure: line 2753: AX_COMPILER_VERSION: command not found ./configure: line 2764: AX_OPENMP: command not found building on compiler version Using AVX instructions if available configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0 -DGAPS_DISABLE_CHECKPOINTS -D__GAPS_R_BUILD__ -Iinclude -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -march=native -fPIC -falign-functions=64 -Wall -g -O2 -c Cogaps.cpp -o Cogaps.o clang: error: the clang compiler does not support '-march=native' make: *** [Cogaps.o] Error 1 ERROR: compilation failed for package ‘CoGAPS’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/CoGAPS’