Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:10:55 -0400 (Thu, 07 Jul 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CNORdt package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORdt.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 354/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CNORdt 1.39.0 (landing page) A. MacNamara
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson | macOS 12.4 Monterey / arm64 | OK | OK | NA | ERROR | |||||||||
Package: CNORdt |
Version: 1.39.0 |
Command: rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORdt_1.39.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNORdt.buildbin-libdir |
StartedAt: 2022-07-07 07:42:20 -0400 (Thu, 07 Jul 2022) |
EndedAt: 2022-07-07 07:42:40 -0400 (Thu, 07 Jul 2022) |
EllapsedTime: 19.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORdt_1.39.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNORdt.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNORdt.buildbin-libdir CNORdt_1.39.0.tar.gz' >>>>>>> * installing *source* package ‘CNORdt’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c simulatorDT.c -o simulatorDT.o simulatorDT.c:243:19: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if((track_cond == nCond)) { ~~~~~~~~~~~^~~~~~~~ simulatorDT.c:243:19: note: remove extraneous parentheses around the comparison to silence this warning if((track_cond == nCond)) { ~ ^ ~ simulatorDT.c:243:19: note: use '=' to turn this equality comparison into an assignment if((track_cond == nCond)) { ^~ = simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable] int nSignals = INTEGER(nSignals_in)[0]; ^ simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable] int nTimes = INTEGER(nTimes_in)[0]; ^ 3 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CNORdt.so simulatorDT.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/CNORdt.buildbin-libdir/00LOCK-CNORdt/00new/CNORdt/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNORdt) >>>>>>> >>>>>>> FIXING LINKS FOR CNORdt.buildbin-libdir/CNORdt/libs/CNORdt.so >>>>>>> ERROR: R installation problem: File /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib not found!