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This page was generated on 2022-07-07 11:10:54 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CINdex on kjohnson


To the developers/maintainers of the CINdex package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CINdex.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 324/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CINdex 1.25.0  (landing page)
Yuriy Gusev
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/CINdex
git_branch: master
git_last_commit: 61a5f76
git_last_commit_date: 2022-04-26 11:31:12 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: CINdex
Version: 1.25.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
StartedAt: 2022-07-06 19:25:16 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 19:30:37 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 321.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
###
##############################################################################
##############################################################################


* checking for file ‘CINdex/DESCRIPTION’ ... OK
* preparing ‘CINdex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToDownloadCytobandInfo.Rmd’ using rmarkdown
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
Quitting from lines 19-28 (HowToDownloadCytobandInfo.Rmd) 
Error: processing vignette 'HowToDownloadCytobandInfo.Rmd' failed with diagnostics:
there is no package called 'rtracklayer'
--- failed re-building ‘HowToDownloadCytobandInfo.Rmd’

--- re-building ‘PrepareInputData.Rmd’ using rmarkdown
Loading required package: BiocFileCache
Loading required package: dbplyr
Quitting from lines 33-45 (PrepareInputData.Rmd) 
Error: processing vignette 'PrepareInputData.Rmd' failed with diagnostics:
there is no package called 'pd.genomewidesnp.6'
--- failed re-building ‘PrepareInputData.Rmd’

--- re-building ‘CINdex.Rnw’ using knitr
--- finished re-building ‘CINdex.Rnw’

SUMMARY: processing the following files failed:
  ‘HowToDownloadCytobandInfo.Rmd’ ‘PrepareInputData.Rmd’

Error: Vignette re-building failed.
Execution halted