Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-11 11:05:26 -0400 (Mon, 11 Jul 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4148 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4168 |
kjohnson | macOS 12.4 Monterey | arm64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 3545 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the BioPlex package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioPlex.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 195/2130 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BioPlex 1.3.1 (landing page) Ludwig Geistlinger
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson | macOS 12.4 Monterey / arm64 | OK | TIMEOUT | skipped | skipped | |||||||||
Package: BioPlex |
Version: 1.3.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:BioPlex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings BioPlex_1.3.1.tar.gz |
StartedAt: 2022-07-10 19:12:30 -0400 (Sun, 10 Jul 2022) |
EndedAt: 2022-07-10 19:16:41 -0400 (Sun, 10 Jul 2022) |
EllapsedTime: 250.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BioPlex.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:BioPlex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings BioPlex_1.3.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/BioPlex.Rcheck’ * using R version 4.2.0 Patched (2022-05-29 r82424) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BioPlex/DESCRIPTION’ ... OK * this is package ‘BioPlex’ version ‘1.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BioPlex’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getCorum: no visible binding for global variable ‘Organism’ Undefined global functions or variables: Organism * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ccleProteome2SummarizedExperiment 44.236 1.510 46.824 annotatePFAM 16.221 1.204 33.510 mapSummarizedExperimentOntoGraph 7.642 0.469 8.482 bioplex2graph 6.930 0.206 7.222 hasSubunit 4.816 0.175 5.160 corum2graphlist 4.349 0.168 5.202 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/BioPlex.Rcheck/00check.log’ for details.
BioPlex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BioPlex ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘BioPlex’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BioPlex)
BioPlex.Rcheck/BioPlex-Ex.timings
name | user | system | elapsed | |
annotatePFAM | 16.221 | 1.204 | 33.510 | |
bioplex2graph | 6.930 | 0.206 | 7.222 | |
ccleProteome2SummarizedExperiment | 44.236 | 1.510 | 46.824 | |
corum2graphlist | 4.349 | 0.168 | 5.202 | |
corum2list | 0.338 | 0.044 | 0.518 | |
getBioPlex | 1.849 | 0.098 | 2.164 | |
getBioplexProteome | 0.230 | 0.020 | 0.308 | |
getCorum | 0.359 | 0.040 | 0.516 | |
getGSE122425 | 0.681 | 0.023 | 0.769 | |
getHEK293GenomeTrack | 0.334 | 0.026 | 0.970 | |
hasSubunit | 4.816 | 0.175 | 5.160 | |
mapSummarizedExperimentOntoGraph | 7.642 | 0.469 | 8.482 | |