Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:31 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the flowGraph package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowGraph.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 664/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowGraph 1.3.0 (landing page) Alice Yue
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: flowGraph |
Version: 1.3.0 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowGraph.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowGraph_1.3.0.tar.gz |
StartedAt: 2022-03-17 19:06:41 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 19:10:16 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 214.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowGraph.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowGraph.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowGraph_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/flowGraph.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowGraph/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowGraph' version '1.3.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowGraph' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE get_child: no visible binding for global variable 'no_cores' get_paren: no visible binding for global variable 'no_cores' ms_psig: no visible binding for global variable 'meta' Undefined global functions or variables: meta no_cores * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fg_save 37.33 0.92 38.28 fg_load 35.28 0.98 36.31 fg_save_plots 34.58 0.72 35.33 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/flowGraph.Rcheck/00check.log' for details.
flowGraph.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL flowGraph ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'flowGraph' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: flowGraph *** installing help indices converting help for package 'flowGraph' finding HTML links ... done cell_type_layers html extract_markers html fg_add_feature html fg_add_summary html fg_clean_phen html fg_clear_features html fg_clear_summary html fg_data_fca html fg_data_pos2 html fg_data_pos30 html fg_extract_phenotypes html fg_extract_raw html fg_extract_samples html fg_feat_cumsum html fg_feat_edge_specenr html fg_feat_mean_class html fg_feat_node_prop html fg_feat_node_specenr html fg_feat_prop_edge html fg_get_feature html fg_get_feature_desc html fg_get_feature_means html fg_get_graph html fg_get_markers html fg_get_meta html fg_get_summary html fg_get_summary_desc html fg_get_summary_index html fg_get_summary_tables html fg_gsub_ids html fg_gsub_markers html fg_load html fg_merge html fg_merge_samples html fg_plot html fg_plot_box html fg_plot_pVSdiff html fg_plot_qq html fg_replace_meta html fg_rm_feature html fg_rm_summary html fg_save html fg_save_plots html fg_set_layout html fg_summary html flowGraph-class html flowGraph html flowGraphSubset html flowGraphSubset_summary_adjust html flowGraphSubset_summary_pars html fpurrr_map html get_child html get_eprop html get_paren html get_phen_list html get_phen_meta html ggdf html loop_ind_f html meandiff html ms_create html ms_psig html plot_gr html set_layout_graph html summary_table html test_c html time_output html tstr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowGraph) Making 'packages.html' ... done
flowGraph.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowGraph) > > test_check("flowGraph") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ] > > proc.time() user system elapsed 3.95 0.39 4.31
flowGraph.Rcheck/flowGraph-Ex.timings
name | user | system | elapsed | |
cell_type_layers | 0 | 0 | 0 | |
fg_add_feature | 0.30 | 0.01 | 0.31 | |
fg_add_summary | 0.67 | 0.02 | 0.69 | |
fg_clean_phen | 0 | 0 | 0 | |
fg_clear_features | 0.63 | 0.00 | 0.63 | |
fg_clear_summary | 0.26 | 0.00 | 0.26 | |
fg_extract_phenotypes | 0.2 | 0.0 | 0.2 | |
fg_extract_raw | 0.54 | 0.00 | 0.54 | |
fg_extract_samples | 0.21 | 0.00 | 0.21 | |
fg_feat_cumsum | 0.21 | 0.00 | 0.21 | |
fg_feat_edge_specenr | 0.25 | 0.02 | 0.26 | |
fg_feat_mean_class | 0.26 | 0.01 | 0.28 | |
fg_feat_node_prop | 0.22 | 0.00 | 0.22 | |
fg_feat_node_specenr | 0.25 | 0.00 | 0.25 | |
fg_feat_prop_edge | 0.21 | 0.00 | 0.21 | |
fg_get_feature | 0.2 | 0.0 | 0.2 | |
fg_get_feature_desc | 0.55 | 0.00 | 0.55 | |
fg_get_feature_means | 0.87 | 0.00 | 0.87 | |
fg_get_graph | 0.19 | 0.00 | 0.19 | |
fg_get_markers | 0.17 | 0.00 | 0.17 | |
fg_get_meta | 0.19 | 0.00 | 0.19 | |
fg_get_summary | 1.79 | 0.05 | 1.84 | |
fg_get_summary_desc | 0.54 | 0.01 | 0.55 | |
fg_get_summary_index | 1.35 | 0.00 | 1.36 | |
fg_get_summary_tables | 1.30 | 0.00 | 1.29 | |
fg_gsub_ids | 0.27 | 0.02 | 0.29 | |
fg_gsub_markers | 0.36 | 0.00 | 0.36 | |
fg_load | 35.28 | 0.98 | 36.31 | |
fg_merge | 0.25 | 0.02 | 0.26 | |
fg_merge_samples | 0.22 | 0.03 | 0.25 | |
fg_plot | 0.31 | 0.00 | 0.32 | |
fg_plot_box | 0.56 | 0.00 | 0.56 | |
fg_plot_pVSdiff | 0.33 | 0.02 | 0.34 | |
fg_plot_qq | 1.00 | 0.06 | 1.06 | |
fg_replace_meta | 0.22 | 0.00 | 0.22 | |
fg_rm_feature | 0.68 | 0.00 | 0.67 | |
fg_rm_summary | 0.26 | 0.00 | 0.27 | |
fg_save | 37.33 | 0.92 | 38.28 | |
fg_save_plots | 34.58 | 0.72 | 35.33 | |
fg_set_layout | 0.2 | 0.0 | 0.2 | |
fg_summary | 0.3 | 0.0 | 0.3 | |
flowGraph-class | 0 | 0 | 0 | |
flowGraph | 0.73 | 0.00 | 0.73 | |
flowGraphSubset | 0 | 0 | 0 | |
flowGraphSubset_summary_adjust | 0 | 0 | 0 | |
flowGraphSubset_summary_pars | 0 | 0 | 0 | |
get_phen_list | 0 | 0 | 0 | |
get_phen_meta | 0 | 0 | 0 | |
ggdf | 0.17 | 0.02 | 0.19 | |
loop_ind_f | 0 | 0 | 0 | |
meandiff | 0 | 0 | 0 | |
plot_gr | 0.93 | 0.01 | 0.94 | |
set_layout_graph | 0.21 | 0.03 | 0.25 | |
summary_table | 0.02 | 0.00 | 0.01 | |
time_output | 0 | 0 | 0 | |
tstr | 0 | 0 | 0 | |