| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:06 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the caOmicsV package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/caOmicsV.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 243/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| caOmicsV 1.25.0 (landing page) Henry Zhang
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: caOmicsV |
| Version: 1.25.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:caOmicsV.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings caOmicsV_1.25.0.tar.gz |
| StartedAt: 2022-03-17 18:38:30 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 18:40:18 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 107.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: caOmicsV.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:caOmicsV.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings caOmicsV_1.25.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/caOmicsV.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'caOmicsV/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'caOmicsV' version '1.25.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'caOmicsV' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotBioNetCircos 6.81 0.64 8.77
bioNetLegend 6.49 0.58 7.06
plotBioNetHeatmap 5.42 0.29 6.67
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
caOmicsV.Rcheck/00install.out
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###
### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL caOmicsV
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'caOmicsV' ...
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'caOmicsV'
finding HTML links ... done
CA_OMICS_ENV html
CA_OMICS_NAME html
CA_OMICS_NA_STRING html
CNVDemoData html
RNA2miRNA html
RNASeq html
RNASeqDemoData html
bioMatrixLegend html
bioNetCircosPlot html
bioNetLegend html
biomatrixPlotDemoData html
bionetPlotDemoData html
caOmicsV-package html
convertToZScores html
drawBioNetNodeBackground html
eraseBioNetNode html
getBezierCurve html
getBioMatrixBasePositions html
getBioMatrixDataRowTop html
getBioMatrixPlotParameters html
getBioNetBasePositions html
getBioNetNodeLinkLine html
getBioNetParameters html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-caOmicsV/00new/caOmicsV/help/getBioNetBasePositions.html
getBioNetPlotLocations html
getBioNetSamplePlotPosition html
getCaOmicsVColors html
getCaOmicsVPlotTypes html
getDefaultNaStrings html
getHeatmapColorScales html
getPlotDataSet html
getPlotOmicsData html
getPlotSampleData html
getPlotSummaryData html
getRelatedPlotData html
initializeBioMatrixPlot html
initializeBioNetCircos html
labelBioNetNodeNames html
linkBioNetNodes html
linkBioNetSamples html
methylDemoData html
miRNA html
miRNADemoData html
plotBioMatrix html
plotBioMatrixBars html
plotBioMatrixBinaryData html
plotBioMatrixCategoryData html
plotBioMatrixHeatmap html
plotBioMatrixRowNames html
plotBioMatrixSampleData html
plotBioMatrixSampleNames html
plotBioNetBars html
plotBioNetCircos html
plotBioNetHeatmap html
plotBioNetLines html
plotBioNetPoints html
plotBioNetPolygons html
plotHeatmapColorScale html
resetBioNetNodePlotAreaBoundary html
sampleDemoData html
setBioMatrixBaseCoordinates html
setBioMatrixPlotArea html
setBioMatrixPlotParameters html
setBioNetCircosBasePlotPositions html
setBioNetNodeLayout html
setBioNetPlotAreaBackground html
setBioNetPlotParameters html
setCaOmicsVColors html
setDefaultNaStrings html
showBioMatrixPlotLayout html
showBioNetNodesLayout html
showSupportedBioNetCircosPlotType html
sortClinicalData html
sortOmicsDataByColumn html
sortOmicsDataByRow html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (caOmicsV)
Making 'packages.html' ... done
caOmicsV.Rcheck/caOmicsV-Ex.timings
| name | user | system | elapsed | |
| CA_OMICS_ENV | 0 | 0 | 0 | |
| CA_OMICS_NAME | 0 | 0 | 0 | |
| CA_OMICS_NA_STRING | 0 | 0 | 0 | |
| CNVDemoData | 0.02 | 0.00 | 0.01 | |
| RNA2miRNA | 0.00 | 0.02 | 0.02 | |
| RNASeq | 0 | 0 | 0 | |
| RNASeqDemoData | 0 | 0 | 0 | |
| bioMatrixLegend | 0.16 | 0.00 | 0.17 | |
| bioNetCircosPlot | 1.62 | 0.29 | 1.92 | |
| bioNetLegend | 6.49 | 0.58 | 7.06 | |
| biomatrixPlotDemoData | 0 | 0 | 0 | |
| bionetPlotDemoData | 0.01 | 0.00 | 0.02 | |
| convertToZScores | 0 | 0 | 0 | |
| drawBioNetNodeBackground | 3.94 | 0.36 | 4.30 | |
| eraseBioNetNode | 1.89 | 0.17 | 2.06 | |
| getBezierCurve | 0 | 0 | 0 | |
| getBioMatrixDataRowTop | 0 | 0 | 0 | |
| getBioMatrixPlotParameters | 0 | 0 | 0 | |
| getBioNetNodeLinkLine | 0 | 0 | 0 | |
| getBioNetParameters | 0.23 | 0.10 | 0.33 | |
| getBioNetPlotLocations | 0.36 | 0.12 | 0.48 | |
| getBioNetSamplePlotPosition | 0 | 0 | 0 | |
| getCaOmicsVColors | 0 | 0 | 0 | |
| getCaOmicsVPlotTypes | 0 | 0 | 0 | |
| getDefaultNaStrings | 0 | 0 | 0 | |
| getHeatmapColorScales | 0 | 0 | 0 | |
| getPlotDataSet | 0.02 | 0.02 | 0.03 | |
| getPlotOmicsData | 0.01 | 0.00 | 0.02 | |
| getPlotSampleData | 0 | 0 | 0 | |
| getPlotSummaryData | 0.00 | 0.01 | 0.01 | |
| getRelatedPlotData | 0.04 | 0.02 | 0.05 | |
| initializeBioMatrixPlot | 0 | 0 | 0 | |
| initializeBioNetCircos | 0.21 | 0.11 | 0.33 | |
| labelBioNetNodeNames | 1.54 | 0.15 | 1.69 | |
| linkBioNetNodes | 1.20 | 0.19 | 1.39 | |
| linkBioNetSamples | 1.30 | 0.11 | 1.48 | |
| methylDemoData | 0.01 | 0.00 | 0.02 | |
| miRNA | 0 | 0 | 0 | |
| miRNADemoData | 0.00 | 0.02 | 0.01 | |
| plotBioMatrix | 0.55 | 0.03 | 0.58 | |
| plotBioMatrixBars | 0.01 | 0.00 | 0.02 | |
| plotBioMatrixBinaryData | 0 | 0 | 0 | |
| plotBioMatrixCategoryData | 0 | 0 | 0 | |
| plotBioMatrixHeatmap | 0.00 | 0.01 | 0.01 | |
| plotBioMatrixRowNames | 0.02 | 0.00 | 0.02 | |
| plotBioMatrixSampleData | 0.02 | 0.00 | 0.01 | |
| plotBioMatrixSampleNames | 0 | 0 | 0 | |
| plotBioNetBars | 1.73 | 0.21 | 2.08 | |
| plotBioNetCircos | 6.81 | 0.64 | 8.77 | |
| plotBioNetHeatmap | 5.42 | 0.29 | 6.67 | |
| plotBioNetLines | 3.18 | 0.19 | 3.36 | |
| plotBioNetPoints | 2.96 | 0.22 | 3.20 | |
| plotBioNetPolygons | 3.41 | 0.16 | 3.66 | |
| plotHeatmapColorScale | 1.05 | 0.03 | 1.08 | |
| resetBioNetNodePlotAreaBoundary | 0 | 0 | 0 | |
| sampleDemoData | 0 | 0 | 0 | |
| setBioMatrixBaseCoordinates | 0 | 0 | 0 | |
| setBioMatrixPlotArea | 0 | 0 | 0 | |
| setBioMatrixPlotParameters | 0 | 0 | 0 | |
| setBioNetCircosBasePlotPositions | 0 | 0 | 0 | |
| setBioNetNodeLayout | 0.33 | 0.05 | 0.37 | |
| setBioNetPlotAreaBackground | 0.62 | 0.06 | 0.73 | |
| setBioNetPlotParameters | 0 | 0 | 0 | |
| setCaOmicsVColors | 0 | 0 | 0 | |
| setDefaultNaStrings | 0 | 0 | 0 | |
| showBioMatrixPlotLayout | 0.64 | 0.01 | 0.66 | |
| showBioNetNodesLayout | 0.85 | 0.05 | 0.89 | |
| showSupportedBioNetCircosPlotType | 0 | 0 | 0 | |
| sortClinicalData | 0 | 0 | 0 | |
| sortOmicsDataByColumn | 0.01 | 0.00 | 0.02 | |
| sortOmicsDataByRow | 0 | 0 | 0 | |