Diana Low
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/SPLINTER |
| git_branch: master |
| git_last_commit: 78ff78a |
| git_last_commit_date: 2021-11-21 00:57:17 -0400 (Sun, 21 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:46 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SPLINTER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1872/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPLINTER 1.21.1 (landing page) Diana Low
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SPLINTER |
| Version: 1.21.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SPLINTER.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings SPLINTER_1.21.1.tar.gz |
| StartedAt: 2022-03-17 20:22:44 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:27:11 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 267.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: SPLINTER.Rcheck |
| Warnings: 1 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SPLINTER.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings SPLINTER_1.21.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/SPLINTER.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SPLINTER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SPLINTER' version '1.21.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SPLINTER' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
See 'D:/biocbuild/bbs-3.15-bioc/meat/SPLINTER.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
eventPlot 9.22 0.21 9.44
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'D:/biocbuild/bbs-3.15-bioc/meat/SPLINTER.Rcheck/00check.log'
for details.
SPLINTER.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SPLINTER
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SPLINTER' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** help
*** installing help indices
converting help for package 'SPLINTER'
finding HTML links ... done
acceptor.m html
addEnsemblAnnotation html
annotateEvents html
callPrimer3 html
checkPrimer html
compatible_cds html
compatible_tx html
donor.m html
eventOutcomeCompare html
eventOutcomeTranslate html
eventPlot html
extendROI html
extractSpliceEvents html
extractSpliceSites html
findCompatibleEvents html
findCompatibleExon html
findExactOverlaps html
findTX html
findTermination html
getPCRsizes html
getRegionDNA html
insertRegion html
makeROI html
makeUniqueIDs html
matchExons html
metaremove html
pcr_result1 html
plot_seqlogo html
primers html
psiPlot html
region_minus_exon html
removeRegion html
remvalue html
roi html
shapiroAcceptor html
shapiroDensity html
shapiroDonor html
splice_data html
splice_fasta html
splitPCRhit html
thecds html
theexons html
valid_cds html
valid_tx html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** testing if installed package keeps a record of temporary installation path
* DONE (SPLINTER)
Making 'packages.html' ... done
SPLINTER.Rcheck/SPLINTER-Ex.timings
| name | user | system | elapsed | |
| acceptor.m | 0 | 0 | 0 | |
| addEnsemblAnnotation | 0 | 0 | 0 | |
| callPrimer3 | 0 | 0 | 0 | |
| checkPrimer | 0.05 | 0.00 | 0.05 | |
| compatible_cds | 0 | 0 | 0 | |
| compatible_tx | 0.01 | 0.00 | 0.02 | |
| donor.m | 0 | 0 | 0 | |
| eventOutcomeCompare | 1.10 | 0.06 | 1.15 | |
| eventOutcomeTranslate | 0.26 | 0.04 | 0.30 | |
| eventPlot | 9.22 | 0.21 | 9.44 | |
| extendROI | 0.44 | 0.00 | 0.43 | |
| extractSpliceEvents | 0 | 0 | 0 | |
| extractSpliceSites | 0.11 | 0.00 | 0.11 | |
| findCompatibleEvents | 0.22 | 0.00 | 0.22 | |
| findCompatibleExon | 0.14 | 0.00 | 0.14 | |
| findTX | 0.01 | 0.00 | 0.01 | |
| getPCRsizes | 4.68 | 0.27 | 4.94 | |
| getRegionDNA | 0.21 | 0.00 | 0.22 | |
| insertRegion | 0.11 | 0.00 | 0.11 | |
| makeROI | 0.18 | 0.00 | 0.17 | |
| makeUniqueIDs | 0 | 0 | 0 | |
| pcr_result1 | 0 | 0 | 0 | |
| plot_seqlogo | 0.01 | 0.01 | 0.03 | |
| primers | 0.00 | 0.02 | 0.02 | |
| psiPlot | 0.22 | 0.01 | 0.23 | |
| region_minus_exon | 0.00 | 0.02 | 0.02 | |
| roi | 0 | 0 | 0 | |
| shapiroAcceptor | 0.42 | 0.04 | 0.47 | |
| shapiroDonor | 0.31 | 0.02 | 0.32 | |
| splice_data | 0.00 | 0.02 | 0.02 | |
| splice_fasta | 0 | 0 | 0 | |
| splitPCRhit | 0 | 0 | 0 | |
| thecds | 0 | 0 | 0 | |
| theexons | 0 | 0 | 0 | |
| valid_cds | 0 | 0 | 0 | |
| valid_tx | 0.02 | 0.00 | 0.02 | |