| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:47 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SPLINTER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1913/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPLINTER 1.22.0 (landing page) Diana Low
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: SPLINTER |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.22.0.tar.gz |
| StartedAt: 2022-10-19 08:27:43 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 08:36:46 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 543.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SPLINTER.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.22.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/SPLINTER.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SPLINTER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SPLINTER’ version ‘1.22.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SPLINTER’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
eventPlot 17.486 0.422 17.928
getPCRsizes 4.864 0.207 5.077
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘SPLINTER’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
| name | user | system | elapsed | |
| acceptor.m | 0.004 | 0.002 | 0.005 | |
| addEnsemblAnnotation | 0.011 | 0.002 | 0.011 | |
| callPrimer3 | 0 | 0 | 0 | |
| checkPrimer | 0.140 | 0.002 | 0.143 | |
| compatible_cds | 0.002 | 0.001 | 0.003 | |
| compatible_tx | 0.002 | 0.002 | 0.003 | |
| donor.m | 0.001 | 0.001 | 0.002 | |
| eventOutcomeCompare | 2.578 | 0.099 | 2.681 | |
| eventOutcomeTranslate | 1.817 | 0.028 | 1.847 | |
| eventPlot | 17.486 | 0.422 | 17.928 | |
| extendROI | 1.243 | 0.032 | 1.276 | |
| extractSpliceEvents | 0.007 | 0.001 | 0.007 | |
| extractSpliceSites | 0.180 | 0.006 | 0.187 | |
| findCompatibleEvents | 0.719 | 0.006 | 0.726 | |
| findCompatibleExon | 0.387 | 0.001 | 0.389 | |
| findTX | 0.025 | 0.001 | 0.025 | |
| getPCRsizes | 4.864 | 0.207 | 5.077 | |
| getRegionDNA | 0.504 | 0.015 | 0.520 | |
| insertRegion | 0.303 | 0.001 | 0.304 | |
| makeROI | 0.510 | 0.002 | 0.512 | |
| makeUniqueIDs | 0.005 | 0.001 | 0.006 | |
| pcr_result1 | 0.001 | 0.001 | 0.002 | |
| plot_seqlogo | 0.072 | 0.003 | 0.075 | |
| primers | 0.001 | 0.001 | 0.002 | |
| psiPlot | 0.453 | 0.008 | 0.463 | |
| region_minus_exon | 0.001 | 0.001 | 0.002 | |
| roi | 0.001 | 0.002 | 0.002 | |
| shapiroAcceptor | 0.781 | 0.024 | 0.828 | |
| shapiroDonor | 0.761 | 0.022 | 0.784 | |
| splice_data | 0.001 | 0.001 | 0.003 | |
| splice_fasta | 0.002 | 0.001 | 0.003 | |
| splitPCRhit | 0.002 | 0.001 | 0.003 | |
| thecds | 0.001 | 0.001 | 0.003 | |
| theexons | 0.002 | 0.001 | 0.003 | |
| valid_cds | 0.001 | 0.002 | 0.003 | |
| valid_tx | 0.001 | 0.002 | 0.003 | |