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This page was generated on 2022-03-18 11:07:45 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for HiCDCPlus on riesling1


To the developers/maintainers of the HiCDCPlus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDCPlus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 871/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCDCPlus 1.3.3  (landing page)
Merve Sahin
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/HiCDCPlus
git_branch: master
git_last_commit: b99cd81
git_last_commit_date: 2022-03-15 23:49:04 -0400 (Tue, 15 Mar 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HiCDCPlus
Version: 1.3.3
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus
StartedAt: 2022-03-17 16:18:01 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:18:47 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 46.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'HiCDCPlus' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c straw.cpp -o straw.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiCDCPlus'
    finding HTML links ... done
    HTClist2gi_list                         html  
    HiCDCPlus                               html  
    HiCDCPlus_chr                           html  
    HiCDCPlus_parallel                      html  
    add_1D_features                         html  
    add_2D_features                         html  
    add_hic_counts                          html  
    add_hicpro_allvalidpairs_counts         html  
    add_hicpro_matrix_counts                html  
    construct_features                      html  
    construct_features_chr                  html  
    construct_features_parallel             html  
    expand_1D_features                      html  
    extract_hic_eigenvectors                html  
    generate_binned_gi_list                 html  
    generate_bintolen_gi_list               html  
    generate_df_gi_list                     html  
    get_chr_sizes                           html  
    get_chrs                                html  
    get_enzyme_cutsites                     html  
    gi_list2HTClist                         html  
    gi_list_Dthreshold.detect               html  
    gi_list_binsize_detect                  html  
    gi_list_read                            html  
    gi_list_topdom                          html  
    gi_list_validate                        html  
    gi_list_write                           html  
    hic2icenorm_gi_list                     html  
    hicdc2hic                               html  
    hicdcdiff                               html  
    straw                                   html  
    straw_dump                              html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCDCPlus)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'treekoR' is missing or broken
 done