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### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CountClust.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings CountClust_1.23.1.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/CountClust.Rcheck'
* using R Under development (unstable) (2021-12-21 r81400 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'CountClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CountClust' version '1.23.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CountClust' can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'CountClust' is deprecated and will be removed from
See 'F:/biocbuild/bbs-3.15-bioc/meat/CountClust.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data   7.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 7.3 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
compGoM       76.00   1.67   78.12
FitGoM        49.06   4.58   53.64
nullmodel_GoM 43.50   4.97   48.47
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  'F:/biocbuild/bbs-3.15-bioc/meat/CountClust.Rcheck/00check.log'
for details.

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### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CountClust
###
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* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CountClust' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CountClust'
    finding HTML links ... done
    AbundanceGoM                            html  
    BatchCorrectedCounts                    html  
    ExtractHighCorFeatures                  html  
    ExtractTopFeatures                      html  
    FitGoM                                  html  
    GTExV6Brain.FitGoM                      html  
    MouseDeng2014.FitGoM                    html  
    MouseJaitinSpleen.FitGoM                html  
    RemoveSparseFeatures                    html  
    StructureGGplot                         html  
    compGoM                                 html  
    compare_omega                           html  
    ex.counts                               html  
    handleNA                                html  
    nullmodel_GoM                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'CountClust' is deprecated and will be removed from
  Bioconductor version 3.16
** testing if installed package can be loaded from final location
Warning: Package 'CountClust' is deprecated and will be removed from
  Bioconductor version 3.16
** testing if installed package keeps a record of temporary installation path
* DONE (CountClust)
Making 'packages.html' ... done