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This page was generated on 2022-10-19 13:21:19 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CountClust on palomino3


To the developers/maintainers of the CountClust package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CountClust.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 422/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CountClust 1.24.0  (landing page)
Kushal Dey
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/CountClust
git_branch: RELEASE_3_15
git_last_commit: 28e078b
git_last_commit_date: 2022-04-26 11:30:33 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CountClust
Version: 1.24.0
Command: chmod a+r CountClust -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust
StartedAt: 2022-10-18 17:54:57 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 17:55:39 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 41.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r CountClust -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust
###
##############################################################################
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* checking for file 'CountClust/DESCRIPTION' ... OK
* preparing 'CountClust':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'count-clust.Rmd' using rmarkdown
Loading required package: usethis
Downloading GitHub repo TaddyLab/maptpx@HEAD
Installing package into 'F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpY7IbOJ/Rinst28dc2a0032bd'
(as 'lib' is unspecified)
* installing *source* package 'maptpx' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -DRPRINT    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -DRPRINT    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c latools.c -o latools.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -DRPRINT    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rhelp.c -o rhelp.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -DRPRINT    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c topics.c -o topics.o
gcc -shared -s -static-libgcc -o maptpx.dll tmp.def init.o latools.o rhelp.o topics.o -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpY7IbOJ/Rinst28dc2a0032bd/00LOCK-maptpx/00new/maptpx/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maptpx)
Loading required package: ggplot2
Warning: Package 'CountClust' is deprecated and will be removed from
  Bioconductor version 3.16
Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda",  :
  downloaded length 0 != reported length 49
Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda",  :
  cannot open URL 'https://cdn.jsdelivr.net/gh/kkdey/GTExV6Brain@master/data/GTExV6Brain.rda': HTTP status was '403 Forbidden'
Quitting from lines 118-130 (count-clust.Rmd) 
Error: processing vignette 'count-clust.Rmd' failed with diagnostics:
cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda'
--- failed re-building 'count-clust.Rmd'

SUMMARY: processing the following file failed:
  'count-clust.Rmd'

Error: Vignette re-building failed.
Execution halted