Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:21:19 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CountClust package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CountClust.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 422/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Kushal Dey
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: CountClust |
Version: 1.24.0 |
Command: chmod a+r CountClust -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust |
StartedAt: 2022-10-18 17:54:57 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 17:55:39 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 41.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CountClust -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust ### ############################################################################## ############################################################################## * checking for file 'CountClust/DESCRIPTION' ... OK * preparing 'CountClust': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'count-clust.Rmd' using rmarkdown Loading required package: usethis Downloading GitHub repo TaddyLab/maptpx@HEAD Installing package into 'F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpY7IbOJ/Rinst28dc2a0032bd' (as 'lib' is unspecified) * installing *source* package 'maptpx' ... ** using staged installation ** libs gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c latools.c -o latools.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rhelp.c -o rhelp.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c topics.c -o topics.o gcc -shared -s -static-libgcc -o maptpx.dll tmp.def init.o latools.o rhelp.o topics.o -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpY7IbOJ/Rinst28dc2a0032bd/00LOCK-maptpx/00new/maptpx/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maptpx) Loading required package: ggplot2 Warning: Package 'CountClust' is deprecated and will be removed from Bioconductor version 3.16 Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda", : downloaded length 0 != reported length 49 Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda", : cannot open URL 'https://cdn.jsdelivr.net/gh/kkdey/GTExV6Brain@master/data/GTExV6Brain.rda': HTTP status was '403 Forbidden' Quitting from lines 118-130 (count-clust.Rmd) Error: processing vignette 'count-clust.Rmd' failed with diagnostics: cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda' --- failed re-building 'count-clust.Rmd' SUMMARY: processing the following file failed: 'count-clust.Rmd' Error: Vignette re-building failed. Execution halted