| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:55 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the TimeSeriesExperiment package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TimeSeriesExperiment.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1921/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TimeSeriesExperiment 1.10.1 (landing page) Lan Huong Nguyen
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: TimeSeriesExperiment |
| Version: 1.10.1 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:TimeSeriesExperiment.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings TimeSeriesExperiment_1.10.1.tar.gz |
| StartedAt: 2021-10-14 11:52:00 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:55:30 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 210.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TimeSeriesExperiment.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:TimeSeriesExperiment.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings TimeSeriesExperiment_1.10.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/TimeSeriesExperiment.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TimeSeriesExperiment/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TimeSeriesExperiment’ version ‘1.10.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TimeSeriesExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘S4Vectors:::selectSome’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
clusterTimeSeries: no visible binding for global variable ‘freq’
clusterTimeSeries: no visible binding for global variable ‘.’
Undefined global functions or variables:
. freq
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
differentialExpression 9.963 0.028 9.992
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.13-bioc/meat/TimeSeriesExperiment.Rcheck/00check.log’
for details.
TimeSeriesExperiment.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL TimeSeriesExperiment ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘TimeSeriesExperiment’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TimeSeriesExperiment)
TimeSeriesExperiment.Rcheck/TimeSeriesExperiment-Ex.timings
| name | user | system | elapsed | |
| TimeSeriesExperiment | 0.236 | 0.000 | 0.237 | |
| addLags | 0.333 | 0.040 | 0.373 | |
| clusterAssignment | 0.406 | 0.006 | 0.412 | |
| clusterData | 0.090 | 0.002 | 0.091 | |
| clusterTimeSeries | 0.409 | 0.000 | 0.409 | |
| colData | 0.063 | 0.000 | 0.063 | |
| collapseReplicates | 0.119 | 0.000 | 0.120 | |
| collapsed-data | 0.254 | 0.004 | 0.258 | |
| dataToTimeSeries | 0.025 | 0.000 | 0.026 | |
| differentialExpression | 9.963 | 0.028 | 9.992 | |
| dimensionReduction | 0.064 | 0.012 | 0.076 | |
| filterFeatures | 0.078 | 0.000 | 0.078 | |
| groups | 0.02 | 0.00 | 0.02 | |
| makeTimeSeries | 0.146 | 0.000 | 0.146 | |
| makeTimeSeriesExperimentFromExpressionSet | 0.001 | 0.000 | 0.001 | |
| makeTimeSeriesExperimentFromSummarizedExperiment | 0.216 | 0.000 | 0.216 | |
| meltMatrix | 0.009 | 0.000 | 0.009 | |
| normalizeData | 0.041 | 0.000 | 0.041 | |
| pathwayEnrichment | 0.571 | 0.187 | 0.776 | |
| pipe | 0.001 | 0.000 | 0.000 | |
| plotEnrichment | 0.626 | 0.012 | 0.638 | |
| plotHeatmap | 0.033 | 0.000 | 0.033 | |
| plotSamplePCA | 0.23 | 0.00 | 0.23 | |
| plotTimeSeries | 0.962 | 0.016 | 0.979 | |
| plotTimeSeriesClusters | 1.292 | 0.052 | 1.345 | |
| plotTimeSeriesPCA | 2.720 | 0.160 | 2.882 | |
| replicates | 0.019 | 0.004 | 0.023 | |
| rowData | 0.040 | 0.000 | 0.039 | |
| row_and_colnames | 0.018 | 0.000 | 0.017 | |
| runPCA | 0.062 | 0.000 | 0.063 | |
| timeSeries | 0.326 | 0.380 | 0.705 | |
| timepointDE | 0.083 | 0.000 | 0.084 | |
| timepoints | 0.039 | 0.000 | 0.040 | |
| trajectoryDE | 0.159 | 0.000 | 0.159 | |
| varianceStabilization | 0.003 | 0.000 | 0.004 | |