| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:34 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the seqplots package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1684/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| seqplots 1.28.0 (landing page) Przemyslaw Stempor
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: seqplots |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/seqplots_1.28.0.tar.gz && rm -rf seqplots.buildbin-libdir && mkdir seqplots.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqplots.buildbin-libdir seqplots_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL seqplots_1.28.0.zip && rm seqplots_1.28.0.tar.gz seqplots_1.28.0.zip |
| StartedAt: 2021-05-05 17:58:58 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:01:01 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 123.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/seqplots_1.28.0.tar.gz && rm -rf seqplots.buildbin-libdir && mkdir seqplots.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqplots.buildbin-libdir seqplots_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL seqplots_1.28.0.zip && rm seqplots_1.28.0.tar.gz seqplots_1.28.0.zip
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install for i386
* installing *source* package 'seqplots' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'seqplots'
finding HTML links ... done
MotifSetup-class html
PlotSetArray-class html
PlotSetList-class html
PlotSetPair-class html
add_local_file html
deployServerInstance html
getPlotSetArray html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/getPlotSetArray.Rd:144: file link 'installed.genomes' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/getPlotSetArray.Rd:147: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
getREF html
ggHeatmapPlotWrapper html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/ggHeatmapPlotWrapper.Rd:75: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
heatmapPlotWrapper html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/heatmapPlotWrapper.Rd:76: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
imPlot2 html
import.narrowPeak html
num2bp html
num2sci html
plot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/plot.Rd:25: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
plotAverage html
plotHeatmap html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/plotHeatmap.Rd:177: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpA9KbwF/R.INSTALL1ba84f37f14/seqplots/man/plotHeatmap.Rd:192: file link 'geom_raster' in package 'ggplot2' does not exist and so has been treated as a topic
plotMext html
run html
seqplots-generic html
seqplots html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'seqplots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqplots' as seqplots_1.28.0.zip
* DONE (seqplots)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'seqplots' successfully unpacked and MD5 sums checked