| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:18 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the Rmmquant package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1543/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rmmquant 1.8.1 (landing page) Zytnicki Matthias
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: Rmmquant |
| Version: 1.8.1 |
| Command: rm -rf Rmmquant.buildbin-libdir && mkdir Rmmquant.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rmmquant.buildbin-libdir Rmmquant_1.8.1.tar.gz |
| StartedAt: 2021-05-06 09:57:39 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:59:14 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 94.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Rmmquant_1.8.1.zip |
| PackageFileSize: 1.21 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf Rmmquant.buildbin-libdir && mkdir Rmmquant.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rmmquant.buildbin-libdir Rmmquant_1.8.1.tar.gz
###
##############################################################################
##############################################################################
install for i386
* installing *source* package 'Rmmquant' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmquant_wrapper.cpp -o mmquant_wrapper.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp.h:57,
from mmquant_wrapper.cpp:1:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp/DataFrame.h: In instantiation of 'void Rcpp::DataFrame_Impl<StoragePolicy>::set_type_after_push() [with StoragePolicy = Rcpp::PreserveStorage]':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp/DataFrame.h:95:13: required from 'void Rcpp::DataFrame_Impl<StoragePolicy>::push_back(const T&, const string&) [with T = Rcpp::Vector<14, Rcpp::PreserveStorage>; StoragePolicy = Rcpp::PreserveStorage; std::__cxx11::string = std::__cxx11::basic_string<char>]'
mmquant.h:2009:35: required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
SEXP data = Parent::get__();
^~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o Rmmquant.dll tmp.def RcppExports.o mmquant_wrapper.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/Rmmquant.buildbin-libdir/00LOCK-Rmmquant/00new/Rmmquant/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rmmquant'
finding HTML links ... done
Rmmquant html
RmmquantClass-class html
RmmquantClassExample html
RmmquantExample html
RmmquantRun html
counts-method html
show-RmmquantClass-method html
validateRmmquant html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Rmmquant' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmquant_wrapper.cpp -o mmquant_wrapper.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp.h:57,
from mmquant_wrapper.cpp:1:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp/DataFrame.h: In instantiation of 'void Rcpp::DataFrame_Impl<StoragePolicy>::set_type_after_push() [with StoragePolicy = Rcpp::PreserveStorage]':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp/DataFrame.h:95:13: required from 'void Rcpp::DataFrame_Impl<StoragePolicy>::push_back(const T&, const string&) [with T = Rcpp::Vector<14, Rcpp::PreserveStorage>; StoragePolicy = Rcpp::PreserveStorage; std::__cxx11::string = std::__cxx11::basic_string<char>]'
mmquant.h:2009:35: required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
SEXP data = Parent::get__();
^~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o Rmmquant.dll tmp.def RcppExports.o mmquant_wrapper.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/Rmmquant.buildbin-libdir/Rmmquant/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rmmquant' as Rmmquant_1.8.1.zip
* DONE (Rmmquant)