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INSTALL report for rBiopaxParser on tokay2

This page was generated on 2020-04-15 03:20:15 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE rBiopaxParser PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 66/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rBiopaxParser 2.27.1
Frank Kramer
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/rBiopaxParser
Branch: master
Last Commit: 026ca10
Last Changed Date: 2020-04-13 16:44:51 -0400 (Mon, 13 Apr 2020)
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK 

Summary

Package: rBiopaxParser
Version: 2.27.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/rBiopaxParser_2.27.1.tar.gz && rm -rf rBiopaxParser.buildbin-libdir && mkdir rBiopaxParser.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rBiopaxParser.buildbin-libdir rBiopaxParser_2.27.1.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL rBiopaxParser_2.27.1.zip && rm rBiopaxParser_2.27.1.tar.gz rBiopaxParser_2.27.1.zip
StartedAt: 2020-04-14 17:36:48 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 17:37:01 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/rBiopaxParser_2.27.1.tar.gz && rm -rf rBiopaxParser.buildbin-libdir && mkdir rBiopaxParser.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rBiopaxParser.buildbin-libdir rBiopaxParser_2.27.1.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL rBiopaxParser_2.27.1.zip && rm rBiopaxParser_2.27.1.tar.gz rBiopaxParser_2.27.1.zip
###
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100  331k  100  331k    0     0  6170k      0 --:--:-- --:--:-- --:--:-- 7053k

install for i386

* installing *source* package 'rBiopaxParser' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rBiopaxParser'
    finding HTML links ... done
    CLASS_INHERITANCE_BP2                   html  
    CLASS_INHERITANCE_BP3                   html  
    CLASS_PROPERTIES_BP2                    html  
    CLASS_PROPERTIES_BP3                    html  
    DATABASE_BIOPAX                         html  
    addBiochemicalReaction                  html  
    addBiopaxInstance                       html  
    addBiopaxInstances                      html  
    addControl                              html  
    addPathway                              html  
    addPathwayComponents                    html  
    addPhysicalEntity                       html  
    addPhysicalEntityParticipant            html  
    addPropertiesToBiopaxInstance           html  
    addhash                                 html  
    addns                                   html  
    biopax                                  html  
    calcGraphOverlap                        html  
    checkValidity                           html  
    colorGraphNodes                         html  
    combineNodes                            html  
    createBiopax                            html  
    diffGraphs                              html  
    downloadBiopaxData                      html  
    generateNewUniqueID                     html  
    getClassProperties                      html  
    getInstanceClass                        html  
    getInstanceProperty                     html  
    getNeighborhood                         html  
    getParticipants                         html  
    getReferencedIDs                        html  
    getReferencingIDs                       html  
    getSubClasses                           html  
    getSuperClasses                         html  
    getXrefAnnotations                      html  
    hasProperty                             html  
    internal_NrOfXMLNodes                   html  
    internal_XMLInstance2DF                 html  
    internal_checkArguments                 html  
    internal_generateXMLfromBiopax          html  
    internal_getBiopaxModelAsDataFrame      html  
    internal_propertyListToDF               html  
    internal_resolvePhysicalEntityParticipant
                                            html  
    intersectGraphs                         html  
    isOfClass                               html  
    isOfNamespace                           html  
    isURL                                   html  
    layoutRegulatoryGraph                   html  
    listComplexComponents                   html  
    listInstances                           html  
    listInteractionComponents               html  
    listPathwayComponents                   html  
    listPathways                            html  
    mergePathways                           html  
    pathway2AdjacancyMatrix                 html  
    pathway2Geneset                         html  
    pathway2Graph                           html  
    pathway2RegulatoryGraph                 html  
    plotRegulatoryGraph                     html  
    print.biopax                            html  
    rBiopaxParser-package                   html  
    readBiopax                              html  
    removeDisconnectedParts                 html  
    removeInstance                          html  
    removeNodes                             html  
    removeProperties                        html  
    selectInstances                         html  
    splitComplex                            html  
    striphash                               html  
    stripns                                 html  
    transitiveClosure                       html  
    transitiveReduction                     html  
    unfactorize                             html  
    uniteGraphs                             html  
    writeBiopax                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rBiopaxParser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rBiopaxParser' as rBiopaxParser_2.27.1.zip
* DONE (rBiopaxParser)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'rBiopaxParser' successfully unpacked and MD5 sums checked