| Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:11 -0400 (Wed, 15 Apr 2020).
| These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
| TO THE DEVELOPERS/MAINTAINERS OF THE ExperimentHub PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 34/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| ExperimentHub 1.13.5 Bioconductor Package Maintainer
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK |
| Package: ExperimentHub |
| Version: 1.13.5 |
| Command: C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD check --force-multiarch --install=check:ExperimentHub.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings ExperimentHub_1.13.5.tar.gz |
| StartedAt: 2020-04-14 21:51:58 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 21:54:38 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 160.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ExperimentHub.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD check --force-multiarch --install=check:ExperimentHub.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings ExperimentHub_1.13.5.tar.gz
###
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* using log directory 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/ExperimentHub.Rcheck'
* using R version 4.0.0 alpha (Rtools40) (2020-03-31 r78116)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ExperimentHub/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ExperimentHub' version '1.13.5'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'ExperimentHubData'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ExperimentHub' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createHubAccessors : <anonymous>: no visible binding for global
variable 'title'
Undefined global functions or variables:
title
Consider adding
importFrom("graphics", "title")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/ExperimentHub.Rcheck/00check.log'
for details.
ExperimentHub.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/ExperimentHub_1.13.5.tar.gz && rm -rf ExperimentHub.buildbin-libdir && mkdir ExperimentHub.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExperimentHub.buildbin-libdir ExperimentHub_1.13.5.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL ExperimentHub_1.13.5.zip && rm ExperimentHub_1.13.5.tar.gz ExperimentHub_1.13.5.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 18889 100 18889 0 0 241k 0 --:--:-- --:--:-- --:--:-- 263k
install for i386
* installing *source* package 'ExperimentHub' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ExperimentHub'
finding HTML links ... done
ExperimentHub-class html
getExperimentHubOption html
listResources html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ExperimentHub' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ExperimentHub' as ExperimentHub_1.13.5.zip
* DONE (ExperimentHub)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'ExperimentHub' successfully unpacked and MD5 sums checked
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ExperimentHub.Rcheck/examples_i386/ExperimentHub-Ex.timings
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ExperimentHub.Rcheck/examples_x64/ExperimentHub-Ex.timings
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