Package: ropls

Version: 1.19.8

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.19.8.tar.gz

StartedAt: 2020-01-16 08:21:54 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 08:24:03 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 128.7 seconds

RetCode: 0

Status:  OK

CheckDir: ropls.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.19.8.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/ropls.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ropls/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ropls’ version ‘1.19.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ropls’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘MultiDataSet’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
getMset 9.312  0.649   9.972
opls    7.868  0.850   8.732
plot    7.054  0.831   7.901
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.11-bioc/meat/ropls.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ropls
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘ropls’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘opls’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ropls)

name	user	system	elapsed
checkW4M	0.323	0.021	0.346
coef	1.267	0.376	1.645
fitted	2.124	0.346	2.473
fromW4M	0.254	0.005	0.260
getEset	1.194	0.339	1.536
getLoadingMN	1.192	0.336	1.529
getMset	9.312	0.649	9.972
getPcaVarVn	0.175	0.024	0.231
getScoreMN	1.392	0.282	1.675
getSubsetVi	0.124	0.010	0.135
getSummaryDF	1.144	0.229	1.373
getVipVn	1.642	0.281	1.923
getWeightMN	1.140	0.319	1.460
opls-class	3.544	0.607	4.159
opls	7.868	0.850	8.732
oplsMultiDataSet-class	0	0	0
plot	7.054	0.831	7.901
predict	0.112	0.009	0.122
print	1.312	0.270	1.584
residuals	1.356	0.170	1.527
ropls-package	4.172	0.749	4.926
show	1.112	0.294	1.448
tested	0.106	0.005	0.114
toW4M	0.204	0.009	0.212
view	0.772	0.086	0.874