Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-16 11:56:29 -0400 (Fri, 16 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE PrecisionTrialDrawer PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1344/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PrecisionTrialDrawer 1.4.0 Giorgio Melloni
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: PrecisionTrialDrawer |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings PrecisionTrialDrawer_1.4.0.tar.gz |
StartedAt: 2020-10-16 04:38:55 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 04:43:20 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 265.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PrecisionTrialDrawer.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings PrecisionTrialDrawer_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/PrecisionTrialDrawer.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PrecisionTrialDrawer’ version ‘1.4.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed newCancerPanel 5.323 0.064 11.226 panelDesigner 5.361 0.024 11.228 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
name | user | system | elapsed | |
CancerPanel-class | 0.001 | 0.000 | 0.002 | |
PrecisionTrialDrawer-package | 0.289 | 0.006 | 0.295 | |
appendRepo | 0.556 | 0.004 | 0.560 | |
coocMutexPlot | 2.537 | 0.008 | 2.545 | |
coveragePlot | 0.357 | 0.004 | 0.362 | |
coverageStackPlot | 0.42 | 0.00 | 0.42 | |
cpArguments | 0.026 | 0.000 | 0.027 | |
cpData | 0.031 | 0.000 | 0.031 | |
cpDataSubset | 0.017 | 0.000 | 0.016 | |
cpDesign | 0.038 | 0.000 | 0.038 | |
cpFreq | 0.369 | 0.012 | 0.393 | |
cpObj | 0.337 | 0.000 | 0.338 | |
cpObj2 | 0.077 | 0.000 | 0.077 | |
dataExtractor | 0.671 | 0.004 | 0.674 | |
filterFusions | 1.052 | 0.000 | 1.052 | |
filterMutations | 1.386 | 0.000 | 1.387 | |
getAlterations | 0.268 | 0.008 | 0.507 | |
newCancerPanel | 5.323 | 0.064 | 11.226 | |
panelDesigner | 5.361 | 0.024 | 11.228 | |
panelOptimizer | 0.001 | 0.000 | 0.001 | |
panelexample | 0.006 | 0.000 | 0.005 | |
propPowerSampleSize | 0.712 | 0.000 | 0.712 | |
saturationPlot | 1.700 | 0.016 | 1.716 | |
showCancerStudy | 0.015 | 0.000 | 0.038 | |
showTumorType | 0.033 | 0.000 | 0.054 | |
subsetAlterations | 0.397 | 0.004 | 0.401 | |
survPowerSampleSize | 0.502 | 0.004 | 0.506 | |
survPowerSampleSize1Arm | 0.567 | 0.008 | 0.574 | |