| Back to Multiple platform build/check report for BioC 3.11 | 
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This page was generated on 2020-10-17 11:59:14 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PrecisionTrialDrawer PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1344/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PrecisionTrialDrawer 1.4.0 Giorgio Melloni 
 | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |  | 
| Package: PrecisionTrialDrawer | 
| Version: 1.4.0 | 
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.4.0.tar.gz | 
| StartedAt: 2020-10-17 04:04:50 -0400 (Sat, 17 Oct 2020) | 
| EndedAt: 2020-10-17 04:10:04 -0400 (Sat, 17 Oct 2020) | 
| EllapsedTime: 313.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: PrecisionTrialDrawer.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.4.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/PrecisionTrialDrawer.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PrecisionTrialDrawer’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
newCancerPanel 7.532  0.112  13.452
panelDesigner  7.051  0.086  13.146
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
| name | user | system | elapsed | |
| CancerPanel-class | 0.002 | 0.000 | 0.002 | |
| PrecisionTrialDrawer-package | 0.321 | 0.010 | 0.332 | |
| appendRepo | 0.487 | 0.020 | 0.511 | |
| coocMutexPlot | 2.093 | 0.053 | 2.148 | |
| coveragePlot | 0.254 | 0.006 | 0.261 | |
| coverageStackPlot | 0.415 | 0.008 | 0.424 | |
| cpArguments | 0.019 | 0.003 | 0.023 | |
| cpData | 0.036 | 0.003 | 0.040 | |
| cpDataSubset | 0.014 | 0.002 | 0.016 | |
| cpDesign | 0.031 | 0.003 | 0.034 | |
| cpFreq | 0.265 | 0.034 | 0.300 | |
| cpObj | 0.316 | 0.011 | 0.328 | |
| cpObj2 | 0.078 | 0.007 | 0.085 | |
| dataExtractor | 0.602 | 0.012 | 0.639 | |
| filterFusions | 0.941 | 0.011 | 0.954 | |
| filterMutations | 1.365 | 0.027 | 1.397 | |
| getAlterations | 0.270 | 0.013 | 0.530 | |
| newCancerPanel | 7.532 | 0.112 | 13.452 | |
| panelDesigner | 7.051 | 0.086 | 13.146 | |
| panelOptimizer | 0.001 | 0.000 | 0.002 | |
| panelexample | 0.011 | 0.003 | 0.013 | |
| propPowerSampleSize | 1.458 | 0.018 | 1.478 | |
| saturationPlot | 2.062 | 0.061 | 2.125 | |
| showCancerStudy | 0.017 | 0.001 | 0.040 | |
| showTumorType | 0.052 | 0.002 | 0.077 | |
| subsetAlterations | 0.755 | 0.025 | 0.781 | |
| survPowerSampleSize | 0.871 | 0.008 | 0.880 | |
| survPowerSampleSize1Arm | 0.888 | 0.007 | 0.896 | |