zlibbioc 0.1.6
Biocore Team c/o BioC user list
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/zlibbioc | | Last Changed Rev: 56177 / Revision: 56351 | | Last Changed Date: 2011-06-14 13:27:07 -0700 (Tue, 14 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ WARNINGS ] | OK |
* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘zlibbioc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘zlibbioc’ version ‘0.1.6’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘zlibbioc’ can be installed ... WARNING
Found the following significant warnings:
R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
See ‘/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
‘/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/00check.log’
for details
* installing *source* package ‘zlibbioc’ ...
Checking for shared library support...
Building shared library libzbioc.1.2.5.dylib with gcc-4.2 -arch i386 -std=gnu99.
Checking for off64_t... No.
Checking for fseeko... Yes.
Checking for unistd.h... Yes.
Using z_ prefix on all symbols.
Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf().
Checking for vsnprintf() in stdio.h... Yes.
Checking for return value of vsnprintf()... Yes.
Checking for attribute(visibility) support... Yes.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
mkdir -p "/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/include"
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘UsingZlibbioc.Rnw’
** testing if installed package can be loaded
* DONE (zlibbioc)