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Package 472/472HostnameOS / ArchBUILDCHECKBUILD BIN
zlibbioc 0.1.6
Biocore Team c/o BioC user list
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/zlibbioc
Last Changed Rev: 56177 / Revision: 56351
Last Changed Date: 2011-06-14 13:27:07 -0700 (Tue, 14 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS [ OK ]

Summary

Package: zlibbioc
Version: 0.1.6
Command: mkdir zlibbioc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh zlibbioc_0.1.6.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R zlibbioc.buildbin-libdir
StartedAt: 2011-06-22 06:35:38 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 06:35:49 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 11.8 seconds
RetCode: 0
Status:  OK 
PackageFile: zlibbioc_0.1.6.tgz
PackageFileSize: 77.97 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=zlibbioc.buildbin-libdir zlibbioc_0.1.6.tar.gz'
>>>>>>> 

* installing *source* package ‘zlibbioc’ ...
Checking for shared library support...
Building shared library libzbioc.1.2.5.dylib with gcc-4.2 -arch i386 -std=gnu99.
Checking for off64_t... No.
Checking for fseeko... Yes.
Checking for unistd.h... Yes.
Using z_ prefix on all symbols.
Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf().
Checking for vsnprintf() in stdio.h... Yes.
Checking for return value of vsnprintf()... Yes.
Checking for attribute(visibility) support... Yes.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
mkdir -p "/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘UsingZlibbioc.Rnw’ 
** testing if installed package can be loaded

* DONE (zlibbioc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR zlibbioc.buildbin-libdir/zlibbioc/libs/i386/zlibbioc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/i386/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/i386/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/i386/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/i386/zlibbioc.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=zlibbioc.buildbin-libdir --libs-only zlibbioc_0.1.6.tar.gz'
>>>>>>> 

* installing *source* package ‘zlibbioc’ ...
Checking for shared library support...
Building shared library libzbioc.1.2.5.dylib with gcc-4.2 -arch ppc -std=gnu99.
Checking for off64_t... No.
Checking for fseeko... Yes.
Checking for unistd.h... Yes.
Using z_ prefix on all symbols.
Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf().
Checking for vsnprintf() in stdio.h... Yes.
Checking for return value of vsnprintf()... Yes.
Checking for attribute(visibility) support... Yes.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
mkdir -p "/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/ppc

* DONE (zlibbioc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR zlibbioc.buildbin-libdir/zlibbioc/libs/ppc/zlibbioc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/ppc/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/ppc/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/ppc/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/ppc/zlibbioc.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=zlibbioc.buildbin-libdir --libs-only zlibbioc_0.1.6.tar.gz'
>>>>>>> 

* installing *source* package ‘zlibbioc’ ...
Checking for shared library support...
Building shared library libzbioc.1.2.5.dylib with gcc-4.2 -arch x86_64 -std=gnu99.
Checking for off64_t... No.
Checking for fseeko... Yes.
Checking for unistd.h... Yes.
Using z_ prefix on all symbols.
Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf().
Checking for vsnprintf() in stdio.h... Yes.
Checking for return value of vsnprintf()... Yes.
Checking for attribute(visibility) support... Yes.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
mkdir -p "/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x86_64

* DONE (zlibbioc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR zlibbioc.buildbin-libdir/zlibbioc/libs/x86_64/zlibbioc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/x86_64/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/x86_64/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/x86_64/zlibbioc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "zlibbioc.buildbin-libdir/zlibbioc/libs/x86_64/zlibbioc.so"