Package: zlibbioc

Version: 0.1.6

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch zlibbioc_0.1.6.tar.gz

StartedAt: 2011-07-07 06:43:39 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 06:43:59 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 20.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: zlibbioc.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'zlibbioc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'zlibbioc' version '0.1.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'zlibbioc/src' contains object files.
* checking whether package 'zlibbioc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.Rcheck/00check.log'
for details

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/include
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/d/biocbld/BBS-2˜1.9-B/meat/ZLIBBI˜1.RCH/00_PKG˜1/zlibbioc/src/zlib-1.2.5'
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
x86_64-w64-mingw32-gcc  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
x86_64-w64-mingw32-ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
x86_64-w64-mingw32-windres --define GCC_WINDRES -o zlibrc.o win32/zlib1.rc
x86_64-w64-mingw32-gcc -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
Creating library file: libzbiocdll.a
x86_64-w64-mingw32-strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/d/biocbld/BBS-2˜1.9-B/meat/ZLIBBI˜1.RCH/00_PKG˜1/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll .
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/include
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'UsingZlibbioc.Rnw' 
** testing if installed package can be loaded

* DONE (zlibbioc)

name	user	system	elapsed
pkgconfig	0.02	0.00	0.02
zlibbioc-package	0.01	0.00	0.02