SMAP 1.4.0
Robin Andersson
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SMAP | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/SMAP.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'SMAP/DESCRIPTION' ... OK
* this is package 'SMAP' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SMAP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating SMAP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SMAP-manual.tex ... OK
* checking SMAP-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/SMAP.Rcheck
---------- Making package SMAP ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making gradient.d from gradient.c
making init.d from init.c
making overlap.d from overlap.c
making prob.d from prob.c
making viterbi.d from viterbi.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c gradient.c -o gradient.o
gradient.c: In function 'hmm_update':
gradient.c:247: warning: unused variable 'tmp'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c init.c -o init.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c overlap.c -o overlap.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c prob.c -o prob.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c viterbi.c -o viterbi.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i SMAP_res.rc -o SMAP_res.o
gcc -std=gnu99 -shared -s -o SMAP.dll SMAP.def gradient.o init.o overlap.o prob.o viterbi.o SMAP_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package SMAP for lazy loading
Creating a new generic function for "plot" in "SMAP"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'SMAP'
Formats: text html latex example chm
GBM text html latex example chm
SMAP-internal text html latex chm
SMAPHMM-class text html latex chm
SMAPHMM text html latex chm
SMAPObservations-class text html latex chm
SMAPObservations text html latex example chm
SMAPProfile-class text html latex chm
SMAPProfiles-class text html latex chm
smap text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\SMAP.Rcheck\00_pkg_src\SMAP\chm\SMAP.chm
Compile time: 0 minutes, 0 seconds
10 Topics
66 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\SMAP.Rcheck\00_pkg_src\SMAP\chm\SMAP.chm, 28,893 bytes
Compression decreased file by 23,575 bytes.
adding MD5 sums
* DONE (SMAP)