Package: Rintact

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check Rintact_1.0.0.tar.gz

StartedAt: 2008-04-09 16:48:36 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 16:52:05 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 208.3 seconds

RetCode: 0

Status: OK

CheckDir: Rintact.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/Rintact.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
  'curEL'
eListHandler : startElement: no visible binding for global variable
  'curEL'
eListHandler : text: no visible binding for global variable 'curEL'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex ... OK

* Installing *source* package 'Rintact' ...
** R
** inst
** preparing package for lazy loading
Loading required package: XML
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:XML :

	 addNode 

Loading required package: ppiStats
Loading required package: GO
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite

Attaching package: 'GO.db'


	The following object(s) are masked from package:GO :

	 GOBPANCESTOR,
	 GOBPCHILDREN,
	 GOBPOFFSPRING,
	 GOBPPARENTS,
	 GOCCANCESTOR,
	 GOCCCHILDREN,
	 GOCCOFFSPRING,
	 GOCCPARENTS,
	 GOMAPCOUNTS,
	 GOMFANCESTOR,
	 GOMFCHILDREN,
	 GOMFOFFSPRING,
	 GOMFPARENTS,
	 GOOBSOLETE,
	 GOSYNONYM,
	 GOTERM 

Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: YEAST
Loading required package: ppiData
Loading required package: Rgraphviz

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

** help
 >>> Building/Updating help pages for package 'Rintact'
     Formats: text html latex example 
  bait                              text    html    latex   example
  complexEntry                      text    html    latex
  complexes                         text    html    latex   example
  eListHandler                      text    html    latex   example
  intactComplex                     text    html    latex
  intactGraph                       text    html    latex
  intactHyperGraph                  text    html    latex
  intactInteraction                 text    html    latex
  intactXML2Graph                   text    html    latex   example
  interactionEntry                  text    html    latex
  interactions                      text    html    latex   example
  interactors                       text    html    latex   example
  list2Matrix                       text    html    latex   example
  organismName                      text    html    latex   example
  prey                              text    html    latex   example
  psi25interaction                  text    html    latex   example
  releaseDate                       text    html    latex   example
  taxId                             text    html    latex   example
  translateIntactID                 text    html    latex   example
** building package indices ...
* DONE (Rintact)