Package: fdrame

Version: 1.10.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check fdrame_1.10.0.tar.gz

RetCode: 0

Time: 42.4 seconds

Status: WARNINGS

CheckDir: fdrame.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/fdrame.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'fdrame/DESCRIPTION' ... OK
* this is package 'fdrame' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'fdrame' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  tcltk
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fdr.error: no visible binding for global variable 'fdrtt'
fdr.gui: no visible binding for '<<-' assignment to 'fdrtt'
fdr.gui: no visible binding for '<<-' assignment to 'designFlag'
fdr.gui: no visible binding for '<<-' assignment to 'frameOverall'
fdr.gui: no visible binding for global variable 'fdrtt'
fdr.gui: no visible binding for '<<-' assignment to 'frameCompute'
fdr.gui: no visible binding for global variable 'frameOverall'
fdr.gui: no visible binding for '<<-' assignment to 'frameInput'
fdr.gui: no visible binding for '<<-' assignment to 'frameOutput'
fdr.gui: no visible binding for '<<-' assignment to 'frameFileOutput'
fdr.gui: no visible binding for global variable 'frameOutput'
fdr.gui: no visible binding for '<<-' assignment to 'framePmethod'
fdr.gui: no visible binding for '<<-' assignment to 'frameNorm'
fdr.gui: no visible binding for global variable 'frameInput'
fdr.gui: no visible binding for '<<-' assignment to 'frameAdj'
fdr.gui: no visible binding for '<<-' assignment to 'framePerms'
fdr.gui: no visible binding for '<<-' assignment to 'frameplot'
fdr.gui: no visible binding for '<<-' assignment to 'filename.input'
fdr.gui: no visible binding for '<<-' assignment to 'filename.output'
fdr.gui: no visible binding for '<<-' assignment to 'design.tcl'
fdr.gui: no visible binding for '<<-' assignment to 'permsNum'
fdr.gui: no visible binding for '<<-' assignment to
  'entry.Filename.input'
fdr.gui: no visible binding for global variable 'filename.input'
fdr.gui: no visible binding for '<<-' assignment to
  'entry.Filename.output'
fdr.gui: no visible binding for global variable 'filename.output'
fdr.gui: no visible binding for '<<-' assignment to 'entry.Design'
fdr.gui: no visible binding for global variable 'design.tcl'
fdr.gui: no visible binding for '<<-' assignment to 'entry.Perms'
fdr.gui: no visible binding for global variable 'frameAdj'
fdr.gui: no visible binding for global variable 'permsNum'
fdr.gui: no visible binding for '<<-' assignment to 'rbpm1'
fdr.gui: no visible binding for global variable 'framePmethod'
fdr.gui: no visible binding for '<<-' assignment to 'rbpm2'
fdr.gui: no visible binding for '<<-' assignment to 'rbno1'
fdr.gui: no visible binding for '<<-' assignment to 'rbno2'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa1'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa2'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa3'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa4'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl1'
fdr.gui: no visible binding for global variable 'frameplot'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl2'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl3'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa1'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa2'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa3'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa4'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa5'
fdr.gui: no visible binding for '<<-' assignment to 'rbpmValue'
fdr.gui: no visible binding for '<<-' assignment to 'rbnoValue'
fdr.gui: no visible binding for '<<-' assignment to 'rbfaValue'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl1Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl2Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl3Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa1Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa2Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa3Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa4Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa5Value'
fdr.gui: no visible binding for global variable 'rbpm1'
fdr.gui: no visible binding for global variable 'rbpmValue'
fdr.gui: no visible binding for global variable 'rbpm2'
fdr.gui: no visible binding for global variable 'rbno1'
fdr.gui: no visible binding for global variable 'rbnoValue'
fdr.gui: no visible binding for global variable 'rbno2'
fdr.gui: no visible binding for global variable 'rbfa1'
fdr.gui: no visible binding for global variable 'rbfaValue'
fdr.gui: no visible binding for global variable 'rbfa2'
fdr.gui: no visible binding for global variable 'rbfa3'
fdr.gui: no visible binding for global variable 'rbfa4'
fdr.gui: no visible binding for global variable 'cbpl1'
fdr.gui: no visible binding for global variable 'cbpl1Value'
fdr.gui: no visible binding for global variable 'cbpl2'
fdr.gui: no visible binding for global variable 'cbpl2Value'
fdr.gui: no visible binding for global variable 'cbpl3'
fdr.gui: no visible binding for global variable 'cbpl3Value'
fdr.gui: no visible binding for global variable 'cbfa1'
fdr.gui: no visible binding for global variable 'cbfa1Value'
fdr.gui: no visible binding for global variable 'cbfa2'
fdr.gui: no visible binding for global variable 'cbfa2Value'
fdr.gui: no visible binding for global variable 'cbfa3'
fdr.gui: no visible binding for global variable 'cbfa3Value'
fdr.gui: no visible binding for global variable 'cbfa4'
fdr.gui: no visible binding for global variable 'cbfa4Value'
fdr.gui: no visible binding for global variable 'cbfa5'
fdr.gui: no visible binding for global variable 'cbfa5Value'
fdr.gui: no visible binding for global variable 'entry.Perms'
fdr.gui: no visible binding for '<<-' assignment to 'BrowseInput.but'
fdr.gui: no visible binding for '<<-' assignment to 'BrowseDesign.but'
fdr.gui: no visible binding for '<<-' assignment to 'BrowseOutput.but'
fdr.gui: no visible binding for '<<-' assignment to 'Compute.but'
fdr.gui: no visible binding for global variable 'frameCompute'
fdr.gui: no visible binding for '<<-' assignment to 'Help.but'
fdr.gui: no visible binding for global variable 'entry.Filename.input'
fdr.gui: no visible binding for global variable 'BrowseInput.but'
fdr.gui: no visible binding for global variable 'entry.Design'
fdr.gui: no visible binding for global variable 'BrowseDesign.but'
fdr.gui: no visible binding for global variable 'entry.Filename.output'
fdr.gui: no visible binding for global variable 'BrowseOutput.but'
fdr.gui: no visible binding for global variable 'Help.but'
fdr.gui: no visible binding for global variable 'Compute.but'
OnBrowseDesign: no visible binding for global variable 'designFlag'
OnBrowseDesign: no visible binding for '<<-' assignment to 'designFlag'
OnBrowseDesign: no visible binding for '<<-' assignment to
  'vector.list'
OnBrowseDesign: no visible binding for global variable 'vector.list'
OnBrowseDesign: no visible binding for '<<-' assignment to
  'ttdesignlist'
OnBrowseDesign: no visible binding for '<<-' assignment to 'tl'
OnBrowseDesign: no visible binding for global variable 'ttdesignlist'
OnBrowseDesign: no visible binding for global variable 'tl'
OnBrowseDesign: no visible binding for global variable 'fdrtt'
OnBrowseInput: no visible binding for '<<-' assignment to
  'filename.input.tk'
OnBrowseInput: no visible binding for global variable
  'filename.input.tk'
OnBrowseInput: no visible binding for '<<-' assignment to
  'filename.input'
OnBrowseInput: no visible binding for global variable
  'entry.Filename.input'
OnBrowseInput: no visible binding for global variable 'filename.input'
OnBrowseOutput: no visible binding for '<<-' assignment to
  'filename.output.tk'
OnBrowseOutput: no visible binding for global variable
  'filename.output.tk'
OnBrowseOutput: no visible binding for '<<-' assignment to
  'filename.output'
OnBrowseOutput: no visible binding for global variable
  'entry.Filename.output'
OnBrowseOutput: no visible binding for global variable
  'filename.output'
OnCancel: no visible binding for global variable 'ttdesignlist'
OnCancel: no visible binding for global variable 'fdrtt'
OnCancel: no visible binding for '<<-' assignment to 'designFlag'
OnCbfa1: no visible binding for global variable 'cbfa1Value'
OnCbfa1: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa1: no visible binding for global variable 'cbfa5'
OnCbfa2: no visible binding for global variable 'cbfa2Value'
OnCbfa2: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa2: no visible binding for global variable 'cbfa5'
OnCbfa3: no visible binding for global variable 'cbfa3Value'
OnCbfa3: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa3: no visible binding for global variable 'cbfa5'
OnCbfa4: no visible binding for global variable 'cbfa4Value'
OnCbfa4: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa4: no visible binding for global variable 'cbfa5'
OnCompute: no visible binding for global variable 'fdrtt'
OnCompute: no visible binding for global variable 'rbnoValue'
OnCompute: no visible binding for global variable 'rbfaValue'
OnCompute: no visible binding for global variable 'cbpl1Value'
OnCompute: no visible binding for global variable 'cbpl2Value'
OnCompute: no visible binding for global variable 'cbpl3Value'
OnCompute: no visible binding for global variable 'cbfa1Value'
OnCompute: no visible binding for global variable 'cbfa2Value'
OnCompute: no visible binding for global variable 'cbfa3Value'
OnCompute: no visible binding for global variable 'cbfa4Value'
OnCompute: no visible binding for global variable 'cbfa5Value'
OnCompute: no visible binding for global variable 'filename.input'
OnCompute: no visible binding for global variable 'filename.output'
OnCompute: no visible binding for global variable 'design.tcl'
OnCompute: no visible binding for global variable 'permsNum'
OnCompute: no visible binding for '<<-' assignment to 'a'
OnOK: no visible binding for global variable 'vector.list'
OnOK: no visible binding for global variable 'tl'
OnOK: no visible binding for global variable 'ttdesignlist'
OnOK: no visible binding for '<<-' assignment to 'designVal'
OnOK: no visible binding for '<<-' assignment to 'design.tcl'
OnOK: no visible binding for global variable 'entry.Design'
OnOK: no visible binding for global variable 'design.tcl'
OnOK: no visible binding for global variable 'fdrtt'
OnOK: no visible binding for '<<-' assignment to 'designFlag'
OnRbfa1: no visible binding for global variable 'cbfa1'
OnRbfa1: no visible binding for global variable 'cbfa2'
OnRbfa2: no visible binding for global variable 'cbfa1'
OnRbfa2: no visible binding for global variable 'cbfa2'
OnRbfa3: no visible binding for global variable 'cbfa1'
OnRbfa3: no visible binding for global variable 'cbfa2'
OnRbfa4: no visible binding for global variable 'cbfa1'
OnRbfa4: no visible binding for global variable 'cbfa2'
OnRbpm1: no visible binding for global variable 'entry.Perms'
OnRbpm2: no visible binding for global variable 'entry.Perms'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating fdrame-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating fdrame-manual.tex ... OK
* checking fdrame-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/fdrame.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/fdrame.Rcheck


---------- Making package fdrame ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making fdr.d from fdr.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c fdr.c -o fdr.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i fdrame_res.rc -o fdrame_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o fdrame.dll fdrame.def fdr.o fdrame_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'fdrame'
     Formats: text html latex example chm 
  design                            text    html    latex   example chm
  exp.arr                           text    html    latex   example chm
  fdr-internal                      text    html    latex           chm
  fdrgui                            text    html    latex   example chm
  fdrma                             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\fdrame.Rcheck\00_pkg_src\fdrame\chm\fdrame.chm


Compile time: 0 minutes, 0 seconds
6	Topics
9	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\fdrame.Rcheck\00_pkg_src\fdrame\chm\fdrame.chm, 21,637 bytes
Compression decreased file by 505 bytes.
  preparing package fdrame for lazy loading
  adding MD5 sums

* DONE (fdrame)