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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 164/247HostnameOSArchBUILDCHECKBUILD BIN

pamr

1.35.0

Rob Tibshirani
Last Changed Date: 2007-04-24 11:31:42 -0700
Last Changed Rev: 24217
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK [ OK ]
pitt Mac OS X (10.4.10) i386  OK  WARNINGS  OK 
Package: pamr
Version: 1.35.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=pamr.buildbin-libdir pamr_1.35.0.tar.gz
RetCode: 0
Time: 25.2 seconds
Status: OK
PackageFile: pamr_1.35.0.zip

Command output

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/pamr.buildbin-libdir

Using auto-selected zip options 'pamr-ZIPDATA=zip pamr-HELP=ziponly'

---------- Making package pamr ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making cox_func.d from cox_func.c
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c cox_func.c -o cox_func.o
g77 -O3 -Wall   -c knnimpute.f -o knnimpute.o
knnimpute.f: In subroutine `knnimp':
In file included from knnimpute.f:0:
knnimpute.f:6: warning: unused variable 'jj'
knnimpute.f: In subroutine `twomis':
knnimpute.f:132: warning: 'dold' might be used uninitialized in this function
windres -I E:/biocbld/bbs-2.1-bioc/R/include  -i pamr_res.rc -o pamr_res.o
gcc  -shared -s  -o pamr.dll pamr.def cox_func.o knnimpute.o pamr_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'pamr.confusion.survival' on or after line 24
Note: unmatched right brace in 'pamr.confusion.survival.Rd' on or after line 24
Note: unmatched right brace in 'pamr.listgenes' on or after line 8
Note: unmatched right brace in 'pamr.listgenes.Rd' on or after line 8
Note: unmatched right brace in 'pamr.plotcen' on or after line 7
Note: unmatched right brace in 'pamr.plotcen.Rd' on or after line 7
Note: unmatched right brace in 'pamr.predict' on or after line 8
Note: unmatched right brace in 'pamr.predict.Rd' on or after line 8
Note: unmatched right brace in 'pamr.predictmany' on or after line 8
Note: unmatched right brace in 'pamr.predictmany.Rd' on or after line 8
 >>> Building/Updating help pages for package 'pamr'
     Formats: text html latex example chm 
  khan                              text    html    latex           chm
  pamr.adaptthresh                  text    html    latex   example chm
  pamr.batchadjust                  text    html    latex   example chm
  pamr.confusion                    text    html    latex   example chm
  pamr.confusion.survival           text    html    latex   example chm
  pamr.cv                           text    html    latex   example chm
  pamr.decorrelate                  text    html    latex   example chm
  pamr.fdr                          text    html    latex   example chm
  pamr.from.excel                   text    html    latex           chm
  pamr.geneplot                     text    html    latex   example chm
  pamr.indeterminate                text    html    latex   example chm
  pamr.internal                     text    html    latex           chm
  pamr.knnimpute                    text    html    latex           chm
  pamr.listgenes                    text    html    latex   example chm
  pamr.makeclasses                  text    html    latex   example chm
  pamr.menu                         text    html    latex   example chm
  pamr.plotcen                      text    html    latex   example chm
  pamr.plotcv                       text    html    latex   example chm
  pamr.plotcvprob                   text    html    latex   example chm
  pamr.plotfdr                      text    html    latex   example chm
  pamr.plotstrata                   text    html    latex   example chm
  pamr.plotsurvival                 text    html    latex   example chm
  pamr.predict                      text    html    latex   example chm
  pamr.predictmany                  text    html    latex   example chm
  pamr.surv.to.class2               text    html    latex   example chm
  pamr.test.errors.surv.compute     text    html    latex   example chm
  pamr.to.excel                     text    html    latex           chm
  pamr.train                        text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.3280\pamr\chm\pamr.chm





Compile time: 0 minutes, 1 second

29	Topics

55	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.3280\pamr\chm\pamr.chm, 53,601 bytes

Compression decreased file by 56,572 bytes.

  adding MD5 sums

packaged installation of package 'pamr' as pamr_1.35.0.zip
* DONE (pamr)