Package: cellHTS2

Version: 2.0.7

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check cellHTS2_2.0.7.tar.gz

RetCode: 0

Time: 87.2 seconds

Status: OK

CheckDir: cellHTS2.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/cellHTS2.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.0.7'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating cellHTS2-Ex.R ... OK
* checking examples ... OK
* creating cellHTS2-manual.tex ... OK
* checking cellHTS2-manual.tex ... OK

* Installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: prada
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 0.3-06)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-3 	 2006-04-06 
** help
 >>> Building/Updating help pages for package 'cellHTS2'
     Formats: text html latex example 
  Bscore                            text    html    latex   example
  ROC-class                         text    html    latex   example
  ROC                               text    html    latex   example
  annotate                          text    html    latex   example
  cellHTS-class                     text    html    latex   example
  cellHTS-package                   text    html    latex
  configure                         text    html    latex   example
  data-KcViab                       text    html    latex   example
  data-KcViabSmall                  text    html    latex   example
  description                       text    html    latex
  getDynamicRange                   text    html    latex   example
  getMeasureRepAgreement            text    html    latex   example
  getReplicatesMatrix               text    html    latex   example
  getTopTable                       text    html    latex   example
  getZfactor                        text    html    latex   example
  imageScreen                       text    html    latex   example
  normalizePlates                   text    html    latex   example
  oneRowPerId                       text    html    latex   example
  plateEffects                      text    html    latex
  plotSpatialEffects                text    html    latex   example
  rawdata                           text    html    latex
  readPlateData                     text    html    latex   example
  scores                            text    html    latex
  spatialNormalization              text    html    latex   example
  state                             text    html    latex
  summarizeChannels                 text    html    latex   example
  summarizeReplicates               text    html    latex   example
  wellAnno                          text    html    latex
  write.tabdel                      text    html    latex   example
  writeReport                       text    html    latex   example
  writeTab                          text    html    latex   example
** building package indices ...
* DONE (cellHTS2)