Package: splicegear

Version: 1.9.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build splicegear

RetCode: 0

Time: 30.7 seconds

Status: OK

PackageFile: splicegear_1.9.0.tar.gz

* checking for file 'splicegear/DESCRIPTION' ... OK
* preparing 'splicegear':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst808023736


---------- Making package splicegear ------------
  adding build stamp to DESCRIPTION
  installing R files
  preparing package splicegear for lazy loading
Loading required package: grid
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Warning: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead
Warning: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead
Warning: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead
Warning: The exprSet class is deprecated, use ExpressionSet instead
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'grid.helpers' on or after line 28
Note: unmatched right brace in 'grid.helpers.Rd' on or after line 28
Note: unmatched right brace in 'plot.SpliceSitesGenomic' on or after line 6
Note: unmatched right brace in 'plot.SpliceSitesGenomic.Rd' on or after line 6
 >>> Building/Updating help pages for package 'splicegear'
     Formats: text html latex example chm 
  Probes-class                      text    html    latex   example chm
  SpliceExprSet-class               text    html    latex   example chm
  SpliceSites-class                 text    html    latex   example chm
  SpliceSitesGenomic-class          text    html    latex   example chm
  as.data.frame.SpliceExprSet       text    html    latex   example chm
  barplot.SpliceSites               text    html    latex   example chm
  buildSpliceSites                  text    html    latex   example chm
  getRelSignStrength                text    html    latex   example chm
  grid.helpers                      text    html    latex           chm
  grid.plot.SpliceSites             text    html    latex   example chm
  isProbeOnSpliceSite               text    html    latex   example chm
  matchprobes2Probes                text    html    latex           chm
  plot.SpliceExprSet                text    html    latex   example chm
  plot.SpliceSites                  text    html    latex   example chm
  plot.SpliceSitesGenomic           text    html    latex   example chm
  sort.SpliceExprSet                text    html    latex   example chm
  spliceset                         text    html    latex   example chm
  split.SpliceSites                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\splicegear\chm\splicegear.chm





Compile time: 0 minutes, 1 second

19	Topics

105	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\splicegear\chm\splicegear.chm, 36,629 bytes

Compression decreased file by 38,299 bytes.

  adding MD5 sums

* DONE (splicegear)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'splicegear_1.9.0.tar.gz'