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| NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
| Package 66/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
exonmap1.1.06Michal OkoniewskiLast Changed Date: 2007-05-25 03:36:45 -0700 Last Changed Rev: 24982 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | [ ERROR ] | ||
| churchill | Solaris 2.9 | sparc | OK | ERROR | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | ERROR | skipped |
| Package: exonmap |
| Version: 1.1.06 |
| Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check exonmap_1.1.06.tar.gz |
| RetCode: 1 |
| Time: 18.8 seconds |
| Status: ERROR |
| CheckDir: exonmap.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/exonmap.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-06-03 r41797) * checking for file 'exonmap/DESCRIPTION' ... OK * this is package 'exonmap' version '1.1.06' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'exonmap' can be installed ... ERROR Installation failed. See '/extra/loc/biocbuild/bbs-2.1-bioc/meat/exonmap.Rcheck/00install.out' for details.
exonmap.Rcheck/00install.out:
* Installing *source* package 'exonmap' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RColorBrewer
Loading required package: RMySQL
Loading required package: DBI
Error in dyn.load(file, ...) :
unable to load shared library '/loc/biocbuild/bbs-2.1-bioc/R/library/RMySQL/libs/RMySQL.so':
/loc/biocbuild/bbs-2.1-bioc/R/library/RMySQL/libs/RMySQL.so: undefined symbol: mysql_more_results
Error: package 'RMySQL' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'exonmap'
** Removing '/extra/loc/biocbuild/bbs-2.1-bioc/meat/exonmap.Rcheck/exonmap'