Package: nnNorm

Version: 2.1.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check nnNorm_2.1.0.tar.gz

RetCode: 0

Time: 331.5 seconds

Status: WARNINGS

CheckDir: nnNorm.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/nnNorm.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-05-03 r41426)
* checking for file 'nnNorm/DESCRIPTION' ... OK
* this is package 'nnNorm' version '2.1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'nnNorm' can be installed ... WARNING
Found the following significant warnings:
  Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
  Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
  Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
  Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
  Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
  Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
  Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
  Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
See '/home/biocbuild/bbs-2.1-bioc/meat/nnNorm.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
maNormNN: no visible binding for global variable 'decay'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating nnNorm-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating nnNorm-manual.tex ... OK
* checking nnNorm-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/bbs-2.1-bioc/meat/nnNorm.Rcheck/00check.log
for details

* Installing *source* package 'nnNorm' ...
** R
** inst
** help
Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
Warning: unmatched brace ('}') in 'detectSpatialBias.Rd' on or after line 32
Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
Warning: unmatched brace ('}') in 'maNormNN.Rd' on or after line 52
 >>> Building/Updating help pages for package 'nnNorm'
     Formats: text html latex example 
  compNorm                          text    html    latex   example
  detectSpatialBias                 text    html    latex   example
  maNormNN                          text    html    latex   example
** building package indices ...
* DONE (nnNorm)