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externalVector

1.5.1

Biocore Team
Last Changed Date: 2006-09-26 17:05:54 -0700
Last Changed Rev: 20172
lamb1 Linux (SUSE 10.1) x86_64  OK  ERROR 
wellington Linux (SUSE 9.2) i686  OK  ERROR 
churchill Solaris 2.9 sparc  OK  ERROR 
lemming Windows Server 2003 (32-bit) x64  OK  ERROR [ ERROR ]
Package: externalVector
Version: 1.5.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=externalVector.BUILDBINinstdir externalVector_1.5.1.tar.gz
RetCode: 1
Time: 12.0 seconds
Status: ERROR
PackageFile: None

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/externalVector.BUILDBINinstdir

Using auto-selected zip options ' externalVector-HELP=ziponly'

---------- Making package externalVector ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c allocator.c -o allocator.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c arraySummary.c -o arraySummary.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c coerce.c -o coerce.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c groups.c -o groups.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c math.c -o math.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c slice.c -o slice.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c storage.c -o storage.o
gcc   -ID:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c subscript.c -o subscript.o
windres -I D:/biocbld/bbs-2.1-bioc/R/include  -i externalVector_res.rc -o externalVector_res.o
gcc  -shared -s  -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o  -LD:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Creating a new generic function for "match" in "externalVector"
Error in genericForPrimitive(f) : methods may not be defined for primitive function "is.finite" in this version of R
Error: unable to load R code in package 'externalVector'
Execution halted
execution of package source for 'externalVector' failed
make[2]: *** [D:/biocbld/bbs-2.1-bioc/meat/externalVector.BUILDBINinstdir/externalVector/R/externalVector] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-externalVector] Error 2
*** Installation of externalVector failed ***

Removing 'D:/biocbld/bbs-2.1-bioc/meat/externalVector.BUILDBINinstdir/externalVector'