Package: pathRender

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check pathRender_1.3.0.tar.gz

RetCode: 1

Time: 71.7 seconds

Status: ERROR

CheckDir: pathRender.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory '/Users/biocbuild/2.0d/Rpacks/pathRender.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-10-21 r39702)
* checking for file 'pathRender/DESCRIPTION' ... OK
* this is package 'pathRender' version '1.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pathRender' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating pathRender-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'pathRender-Ex.R' failed.
The error most likely occurred in:

> ### * rendercMAP
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: rendercMAPPathway
> ### Title: Render pathways from cMAP
> ### Aliases: rendercMAPPathway
> ### Keywords: graphs
> 
> ### ** Examples
> 
>    rendercMAPPathway("plateletapppathway")
[1] "BioCarta"

 *** caught bus error ***
address 0x40, cause 'non-existent physical address'

Traceback:
 1: .Call("Rgraphviz_doLayout", graph, as.integer(type), PACKAGE = "Rgraphviz")
 2: layoutGraph(g)
 3: agopen(x, name = name, layout = TRUE, layoutType = y, attrs = attrs,     nodeAttrs = nodeAttrs, edgeAttrs = edgeAttrs, subGList = subGList,     recipEdges = recipEdges)
 4: .local(x, y, ...)
 5: plot(G, nodeAttrs = nAttrs, edgeAttrs = eAttrs, recipEdges = "distinct")
 6: plot(G, nodeAttrs = nAttrs, edgeAttrs = eAttrs, recipEdges = "distinct")
 7: renderOnecMAPPathway(i_mem, bi, bm)
 8: rendercMAPPathway("plateletapppathway")
aborting ...

* Installing *source* package 'pathRender' ...
** R
** save image
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: cMAP
** help
 >>> Building/Updating help pages for package 'pathRender'
     Formats: text html latex example 
  rendercMAP                        text    html    latex   example
** building package indices ...
* DONE (pathRender)