See download stats for: Bioconductor software packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor annotation packages

This page was generated on 2024-09-04 17:29:04 -0400 (Wed, 04 Sep 2024).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 30

1	GenomeInfoDbData (53891)
2	GO.db (22435)
3	org.Hs.eg.db (18190)
4	HDO.db (14114)
5	org.Mm.eg.db (8180)
6	TxDb.Hsapiens.UCSC.hg19.knownGene (4903)
7	BSgenome.Hsapiens.UCSC.hg38 (3947)
8	reactome.db (3393)
9	BSgenome.Hsapiens.UCSC.hg19 (2981)
10	EnsDb.Hsapiens.v86 (2868)

11	TxDb.Hsapiens.UCSC.hg38.knownGene (2556)
12	DO.db (1872)
13	hgu133plus2.db (1838)
14	org.Rn.eg.db (1712)
15	JASPAR2020 (1598)
16	FDb.InfiniumMethylation.hg19 (1460)
17	IlluminaHumanMethylation450kanno.ilmn12.hg19 (1458)
18	TxDb.Mmusculus.UCSC.mm10.knownGene (1413)
19	HPO.db (1313)
20	IlluminaHumanMethylation450kmanifest (1267)

21	BSgenome.Mmusculus.UCSC.mm10 (1211)
22	org.Dm.eg.db (1190)
23	IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (1177)
24	MPO.db (1152)
25	Homo.sapiens (1134)
26	IlluminaHumanMethylationEPICmanifest (1133)
27	SNPlocs.Hsapiens.dbSNP144.GRCh37 (994)
28	org.Dr.eg.db (955)
29	BSgenome.Hsapiens.1000genomes.hs37d5 (928)
30	hgu133a.db (898)

All annotation packages

All annotation package stats in one file: annotation_pkg_stats.tab

All annotation package download scores in one file: annotation_pkg_scores.tab

See Download stats for Bioconductor annotation repository (all packages combined)

4

4.10.1 (1)

A

	aads.rnai (1)
	ABAData (1)
	abc (1)
	abc.data (1)
	abind (2)
	ace.fma (1)
	acepack (3)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (1)
	AdaptGauss (1)
	addinslist (1)
	ade4 (5)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adephylo (1)
	ADGofTest (1)
	aditools (1)
	adjustedCurves (1)
	adme16cod (1)
	adme16cod.db (29)
	admiral (2)
	admiral.test (1)
	admiraldev (1)
	admisc (15)
	ADMM (1)
	adSplit (1)
	AER (1)
	afex (2)
	affxparser (1)
	affy (1)
	affycoretools (1)
	affydata (1)
	affyio (1)
	affyPLM (1)
	ag (2)
	ag.db (29)
	agahomology (2)
	agcdf (24)
	AGHmatrix (0)
	AgiMicroRna (0)
	agprobe (23)
	agricolae (9)
	agridat (1)
	agrmt (1)
	AHCytoBands (17)
	AHEnsDbs (26)
	AHLRBaseDbs (24)
	AHMeSHDbs (27)
	AHPathbankDbs (20)
	AHPubMedDbs (25)
	AHWikipathwaysDbs (19)
	AICcmodavg (1)
	aigoraFitMini (1)
	AIPW (1)
	airr (1)
	airway (1)
	akima (1)
	alabama (1)
	alakazam (1)
	ald (0)
	ALDEx2 (1)
	aldvmm (1)
	alembic (0)
	AlgDesign (3)
	alkahest.generic (0)
	ALL (11)
	alluvial (1)
	almanac (0)
	alphahull (1)
	AlphaMissense.v2023.hg19 (13)
	AlphaMissense.v2023.hg38 (17)
	alphashape3d (1)
	alphavantager (1)
	alr3 (1)
	alr4 (1)
	altair (1)
	alternativeSplicingEvents.hg19 (20)
	alternativeSplicingEvents.hg38 (21)
	amap (1)
	AMARETTO (0)
	ambient (1)
	Amelia (1)
	AmesHousing (1)
	amgen.okta.client (1)
	amgsafetyvis (1)
	amlogger (1)
	ANCOMBC (1)
	angrycell (1)

	animation (2)
	annaffy (1)
	anndata (1)
	AnnoProbe (1)
	annotate (2)
	AnnotationDbi (24)
	AnnotationFilter (1)
	AnnotationForge (1)
	AnnotationHub (3)
	AnnotationHubData (1)
	annotatr (1)
	anopheles.db0 (29)
	anRichment (0)
	anticlust (1)
	AnVIL (0)
	anytime (6)
	aod (2)
	apcluster (1)
	APCtools (1)
	ape (50)
	apeglm (1)
	apex (1)
	apexcharter (1)
	APL (1)
	apLCMS (1)
	aplot (58)
	appgen (1)
	aqp (1)
	arabidopsis.db0 (36)
	archive (2)
	ArchR (0)
	argparse (13)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (3)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (2)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (1)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (2)
	argusDS.distributions (1)
	argusDS.driver.importance (3)
	argusDS.FCUtilities (2)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (1)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (3)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (1)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (1)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (2)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (1)
	argusDS.shiny.utils (2)
	argusDS.signal.dataprep (1)
	argusDS.smoothers (1)
	argusDS.spread.trading.utils (3)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (2)
	argusDS.Studio.utils (3)
	argusDS.tabulator (2)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (2)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (8)
	aroma.apd (9)
	aroma.core (9)
	aroma.light (1)
	ArrayExpress (1)
	arrayhelpers (1)
	arrayop (1)
	arrow (23)

	arsenal (2)
	arules (4)
	ArvadosR (1)
	arvupload (1)
	ascii (1)
	asciicast (1)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ash (6)
	ashr (2)
	asht (1)
	AsioHeaders (6)
	askpass (198)
	ASMap (1)
	asremlPlus (1)
	assert (1)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (11)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (12)
	assertr (3)
	assertthat (2)
	ASSET (0)
	AssotesteR (0)
	astsa (1)
	ATACseqQC (1)
	ATE (1)
	atgenomeatrefseq (1)
	atgenomeatrefseq7cdf (1)
	atgenomeatrefseq7probe (1)
	atgenomeatrefseqcdf (1)
	atgenomeatrefseqprobe (1)
	atgenomeattair (1)
	atgenomeattaircdf (1)
	atgenomeattairprobe (1)
	atgenomeattigr (1)
	atgenomeattigr7cdf (1)
	atgenomeattigr7probe (1)
	atgenomeattigrcdf (1)
	atgenomeattigrprobe (1)
	ath1121501 (2)
	ath1121501.db (58)
	ath1121501cdf (56)
	ath1121501frmavecs (8)
	ath1121501probe (27)
	ath1atrefseq (1)
	ath1atrefseq7cdf (1)
	ath1atrefseq7probe (1)
	ath1atrefseqcdf (1)
	ath1atrefseqprobe (1)
	ath1attair (1)
	ath1attaircdf (1)
	ath1attairprobe (1)
	ath1attigr (1)
	ath1attigr7cdf (1)
	ath1attigr7probe (1)
	ath1attigrcdf (1)
	ath1attigrprobe (1)
	athhomology (2)
	ATR (1)
	attachment (4)
	attempt (1)
	AUC (1)
	AUCell (1)
	audio (2)
	audited (1)
	auth0 (1)
	av (1)
	ava2 (2)
	aws (1)
	aws.ec2metadata (1)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	azcore (1)
	Azimuth (1)
	AzureAuth (2)
	AzureGraph (5)
	AzureRMR (6)
	AzureStor (1)

B

	b64 (1)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (1)
	backbone (0)
	backports (101)
	badger (0)
	badminton (1)
	baguette (1)
	bain (1)
	BalancedSampling (0)
	ballgown (0)
	bambu (0)
	BANDITS (0)
	barley1cdf (23)
	barley1probe (22)
	BART (1)
	bartMachine (1)
	bartMachineJARs (1)
	base (0)
	base2grob (1)
	base64 (4)
	base64enc (2)
	base64url (1)
	basefun (1)
	basemaps (1)
	BASiCS (1)
	basilisk (1)
	basilisk.utils (1)
	batchelor (1)
	BatchJobs (1)
	batchtools (1)
	battenberg (1)
	BayesFactor (2)
	BayesFM (1)
	bayesm (9)
	bayesmeta (1)
	bayesplot (13)
	BayesPostEst (1)
	bayesQR (1)
	bayestestR (9)
	BayesX (1)
	baySeq (5)
	BB (1)
	BBmisc (1)
	bbmle (14)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	bcellViper (0)
	bcp (1)
	BDAtemplates (1)
	bdsmatrix (14)
	BE (1)
	beachmat (2)
	beadarray (1)
	beanplot (1)
	beaver (1)
	beepr (1)
	beeswarm (1)
	bench (1)
	benchmarkme (1)
	benchmarkmeData (1)
	benchr (1)
	berryFunctions (1)
	Bessel (1)
	bestglm (1)
	bestNormalize (2)
	betareg (1)
	bettermc (1)
	bezier (1)
	BFpack (1)
	BgeeDB (1)
	BGLR (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	BH (223)
	BIApylon (1)
	BiasedUrn (14)
	BIAutils (1)
	bib2df (1)
	bibtex (2)
	biclust (0)
	BIEN (1)
	bife (1)
	biganalytics (0)
	bigassertr (1)
	bigD (1)
	bigdist (0)
	BIGL (1)
	biglasso (1)
	biglm (3)
	biglmm (1)
	bigmemory (2)
	bigmemory.sri (2)
	bigparallelr (1)
	bigreadr (1)
	bigrquery (15)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
	bigutilsr (1)
	billboarder (10)
	binb (1)
	bindr (1)
	bindrcpp (1)
	binGroup (1)
	binman (2)
	binom (1)
	binr (0)
	bio3d (4)
	biobank (1)
	Biobase (9)
	BioBase (1)
	bioc::GenomeInfoDbData (0)
	BiocBaseUtils (1)
	BiocCheck (1)
	BiocFileCache (5)
	BiocFileCaches (1)
	BiocGenerics (24)
	BiocInstaller (1)
	BiocIO (2)
	BiocManager (290)
	BiocNeighbors (3)
	Bioconductor (1)
	bioconductor (1)

	BiocParallel (19)
	BiocSingular (2)
	BiocSklearn (0)
	BiocStyle (1)
	BiocVersion (28)
	biocViews (1)
	BiocWorkflowTools (0)
	BiodiversityR (1)
	BioEnricher (1)
	Biogenerics (1)
	BioGenerics (1)
	BioInstaller (1)
	biomaRt (2)
	BioMartGOGeneSets (26)
	biomartr (1)
	biomformat (1)
	biomod2 (1)
	BioNet (1)
	biostat3 (1)
	biostatR (0)
	biostatUtil (0)
	Biostring (1)
	Biostrings (17)
	biotools (1)
	BioVersion (1)
	biovizBase (1)
	BiplotML (1)
	bit (58)
	bit64 (12)
	bitops (40)
	bizdays (2)
	bkbutils (1)
	BlakerCI (1)
	blastula (1)
	blavaan (1)
	blme (7)
	blob (80)
	blockcluster (1)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blogdown (0)
	bluster (1)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (1)
	BMisc (1)
	bmp (1)
	bmspal (1)
	bnlearn (2)
	BOIN (1)
	bold (1)
	bookdown (41)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (75)
	bootstrap (1)
	botor (0)
	bovine.db (29)
	bovine.db0 (41)
	bovinecdf (26)
	bovineprobe (25)
	box (11)
	box.linters (1)
	BPCells (1)
	bpcp (1)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (1)
	brave (1)
	brew (70)
	brglm (1)
	brglm2 (1)
	bricks (0)
	brickster (0)
	BridgeDbR (1)
	bridgesampling (1)
	brio (148)
	brms (1)
	brmsmargins (1)
	Brobdingnag (1)
	broman (1)
	broom (115)
	broom.helpers (11)
	broom.mixed (1)
	broomExtra (1)
	BrowserViz (1)
	bs4Dash (13)
	BSgenome (3)
	BSGenome (0)
	BSgenome.Alyrata.JGI.v1 (22)
	BSgenome.Amellifera.BeeBase.assembly4 (26)
	BSgenome.Amellifera.NCBI.AmelHAv3.1 (18)
	BSgenome.Amellifera.UCSC.apiMel2 (32)
	BSgenome.Amellifera.UCSC.apiMel2.masked (19)
	BSgenome.Aofficinalis.NCBI.V1 (19)
	BSgenome.Athaliana.TAIR.01222004 (3)
	BSgenome.Athaliana.TAIR.04232008 (24)
	BSgenome.Athaliana.TAIR.TAIR9 (68)
	BSgenome.Btaurus.UCSC.bosTau3 (49)
	BSgenome.Btaurus.UCSC.bosTau3.masked (19)
	BSgenome.Btaurus.UCSC.bosTau4 (41)
	BSgenome.Btaurus.UCSC.bosTau4.masked (19)
	BSgenome.Btaurus.UCSC.bosTau6 (83)
	BSgenome.Btaurus.UCSC.bosTau6.masked (70)
	BSgenome.Btaurus.UCSC.bosTau8 (27)
	BSgenome.Btaurus.UCSC.bosTau9 (39)
	BSgenome.Btaurus.UCSC.bosTau9.masked (16)
	BSgenome.Carietinum.NCBI.v1 (19)
	BSgenome.Celegans.UCSC.ce10 (61)
	BSgenome.Celegans.UCSC.ce11 (163)
	BSgenome.Celegans.UCSC.ce2 (367)
	BSgenome.Celegans.UCSC.ce6 (26)
	BSgenome.Cfamiliaris.UCSC.canFam2 (35)
	BSgenome.Cfamiliaris.UCSC.canFam2.masked (20)
	BSgenome.Cfamiliaris.UCSC.canFam3 (52)
	BSgenome.Cfamiliaris.UCSC.canFam3.masked (20)
	BSgenome.Cjacchus.UCSC.calJac3 (19)
	BSgenome.Cjacchus.UCSC.calJac4 (36)
	BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1 (16)
	BSgenome.Creinhardtii.JGI.v5.6 (23)
	BSgenome.Dmelanogaster.BDGP.Release5 (1)
	BSgenome.Dmelanogaster.FlyBase.r51 (1)
	BSgenome.Dmelanogaster.UCSC.dm2 (54)
	BSgenome.Dmelanogaster.UCSC.dm2.masked (20)
	BSgenome.Dmelanogaster.UCSC.dm3 (244)
	BSgenome.Dmelanogaster.UCSC.dm3.masked (20)
	BSgenome.Dmelanogaster.UCSC.dm6 (202)

	BSgenome.Drerio.UCSC.danRer10 (154)
	BSgenome.Drerio.UCSC.danRer11 (63)
	BSgenome.Drerio.UCSC.danRer5 (34)
	BSgenome.Drerio.UCSC.danRer5.masked (18)
	BSgenome.Drerio.UCSC.danRer6 (32)
	BSgenome.Drerio.UCSC.danRer6.masked (18)
	BSgenome.Drerio.UCSC.danRer7 (297)
	BSgenome.Drerio.UCSC.danRer7.masked (19)
	BSgenome.Dvirilis.Ensembl.dvircaf1 (15)
	BSgenome.Ecoli.NCBI.20080805 (221)
	BSgenome.Gaculeatus.UCSC.gasAcu1 (34)
	BSgenome.Gaculeatus.UCSC.gasAcu1.masked (18)
	BSgenome.Ggallus.ENSEMBL.galGal6 (0)
	BSgenome.Ggallus.UCSC.galGal3 (108)
	BSgenome.Ggallus.UCSC.galGal3.masked (18)
	BSgenome.Ggallus.UCSC.galGal4 (33)
	BSgenome.Ggallus.UCSC.galGal4.masked (19)
	BSgenome.Ggallus.UCSC.galGal5 (19)
	BSgenome.Ggallus.UCSC.galGal6 (38)
	BSgenome.Gmax.NCBI.Gmv40 (18)
	BSgenome.Hsapiens.1000genomes.hs37d5 (928)
	BSgenome.Hsapiens.1000genomes.hs38d5 (1)
	BSgenome.Hsapiens.1000genomes.hs3d5 (1)
	BSgenome.Hsapiens.NCBI.b36v3 (1)
	BSgenome.Hsapiens.NCBI.GRCh38 (783)
	BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 (77)
	BSgenome.Hsapiens.UCSC.hg1 (0)
	BSgenome.Hsapiens.UCSC.hg16 (1)
	BSgenome.Hsapiens.UCSC.hg17 (35)
	BSgenome.Hsapiens.UCSC.hg17.masked (19)
	BSgenome.Hsapiens.UCSC.hg18 (249)
	BSgenome.Hsapiens.UCSC.hg18.masked (61)
	BSgenome.Hsapiens.UCSC.hg19 (2981)
	bsgenome.hsapiens.ucsc.hg19 (1)
	BSgenome.Hsapiens.UCSC.hg19.masked (150)
	BSgenome.Hsapiens.UCSC.hg38 (3947)
	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major (28)
	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor (24)
	BSgenome.Hsapiens.UCSC.hg38.masked (194)
	BSgenome.Hsapiens.UCSC.hs1 (28)
	BSgenome.Hsapiens.UCSC.mm10 (0)
	BSgenome.Mdomestica.UCSC.monDom5 (17)
	BSgenome.Mfascicularis.NCBI.5.0 (32)
	BSgenome.Mfascicularis.NCBI.6.0 (21)
	BSgenome.Mfuro.UCSC.musFur1 (20)
	BSgenome.Mmul10.SIVmac251 (1)
	BSgenome.Mmulatta.NCBI.mmul10.tmp (0)
	BSgenome.Mmulatta.UCSC.rheMac10 (159)
	BSgenome.Mmulatta.UCSC.rheMac2 (35)
	BSgenome.Mmulatta.UCSC.rheMac2.masked (19)
	BSgenome.Mmulatta.UCSC.rheMac3 (34)
	BSgenome.Mmulatta.UCSC.rheMac3.masked (22)
	BSgenome.Mmulatta.UCSC.rheMac8 (94)
	BSgenome.Mmusculus.UCSC.hg38 (0)
	BSgenome.Mmusculus.UCSC.mm10 (1211)
	Bsgenome.Mmusculus.UCSC.mm10 (0)
	BSgenome.Mmusculus.UCSC.mm10.masked (69)
	BSgenome.Mmusculus.UCSC.mm19 (1)
	BSgenome.Mmusculus.UCSC.mm1z (1)
	BSgenome.Mmusculus.UCSC.mm39 (125)
	BSgenome.Mmusculus.UCSC.mm6 (1)
	BSgenome.Mmusculus.UCSC.mm7 (1)
	BSgenome.Mmusculus.UCSC.mm8 (131)
	BSgenome.Mmusculus.UCSC.mm8.masked (127)
	BSgenome.Mmusculus.UCSC.mm9 (352)
	BSgenome.Mmusculus.UCSC.mm9.masked (42)
	BSgenome.Oaries.ENSEMBL.RambV2 (1)
	BSgenome.Omela.CUSTOM.oenMel1.1 (0)
	BSgenome.Osativa.MSU.MSU7 (44)
	BSgenome.Ppaniscus.UCSC.panPan1 (16)
	BSgenome.Ppaniscus.UCSC.panPan2 (26)
	BSgenome.Ptroglodytes.UCSC.panTro2 (35)
	BSgenome.Ptroglodytes.UCSC.panTro2.masked (18)
	BSgenome.Ptroglodytes.UCSC.panTro3 (33)
	BSgenome.Ptroglodytes.UCSC.panTro3.masked (28)
	BSgenome.Ptroglodytes.UCSC.panTro5 (19)
	BSgenome.Ptroglodytes.UCSC.panTro6 (19)
	BSgenome.Rnorvegicus.UCSC.rn4 (60)
	BSgenome.Rnorvegicus.UCSC.rn4.masked (27)
	BSgenome.Rnorvegicus.UCSC.rn5 (147)
	BSgenome.Rnorvegicus.UCSC.rn5.masked (35)
	BSgenome.Rnorvegicus.UCSC.rn6 (123)
	BSgenome.Rnorvegicus.UCSC.rn7 (113)
	BSgenome.Scerevisiae.UCSC.sacCer1 (142)
	BSgenome.Scerevisiae.UCSC.sacCer2 (197)
	BSgenome.Scerevisiae.UCSC.sacCer3 (184)
	BSgenome.Sscrofa.UCSC.susScr11 (43)
	BSgenome.Sscrofa.UCSC.susScr3 (30)
	BSgenome.Sscrofa.UCSC.susScr3.masked (20)
	BSgenome.Tgondii.ToxoDB.7.0 (23)
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	hs133av2ptensg7probe (1)
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	hs133av2ptensgprobe (1)
	hs133av2ptenst (1)
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	hs133phsentrezgcdf (1)
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	hs133phsrefseq (1)
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	hs133phsrefseqprobe (1)
	hs133phsug (1)
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	hs133pptrefseq (1)
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	hs133xhsentrezgprobe (1)
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	hs133xhsrefseqcdf (1)
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	hs95av2ptensecdf (1)
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	hs95av2ptensg (1)
	hs95av2ptensg7cdf (1)

	hs95av2ptensg7probe (1)
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	hs95av2ptensgprobe (1)
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	HsAgilentDesign026652.db (52)
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	hsex10stv2hsensg (1)
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	hsex10stv2hsenst (1)
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	hsex10stv2ptense (1)
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	hugene10sttranscriptcluster.db (577)
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I

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